G105940 (ubn1)


Basic Information

Item Value
gene id G105940
gene name ubn1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23580155 ~ 23586217 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143123
TATCAGCTTAGCTCAGTCACATTTTAGGACATACAAAACTACATGCAGTGCTATTACTCCCAAGTTTGTGCTTAATGCAACACCCTCTTCCTTAAGAATCCCtgagacaataaataaatggcattttacatttcaggaaAAAAGCAAAACTAATTCAGCCGTCCATTAATTAAGACTCTTTTCATTGTGAGCGCCTTGCGTTCATTTTGTAAATTACCTTCAGTCCATGTcacataaaacataaatcagTGCCAActgatgaaagaaagaaagactaaCTAAAGAAAAACTAATCAGCTAAAGAGTTAACTGTCTAAAGCTGAGGAGATCAGTCTCGTACACATACTGCTCTACAAGGTCTTTGGAAAGTACATGGAATGCTGTTTAAAGCATAATGTTAGGAGCTGATAGGCaggaactaaaaaaataagaaggaTTGTGAAAAGTAATAGAGAATTTTAGACAGGAAAGGGTAAAAAGAACAAAGTGCCTTAAGCCTACGTTCTTAAGTGCAGATATTACAGTAAAGACAAAAAGAACTCAAAGgagaaacatttaaaagatcTCAGGCAGAAGAAGACGACGAAGAAGAAAGCATCAGCTTCAAAAGTCCTTAAGTGCAGATATTACAGTAAAGACAAAActcaaaaaggaaaagaaaatattattattgttattaataatcatgattattattaaaggCACCACTACCACATTCTTGATGCACTGATGGTCACATGCCTAGTCTggattagtagtaatagtagcacaTAGTCTGAACTGGGTTATTTTCACGCGTGTAGCTTCTCCATCAGCTTAGTGTAACActtttcagtttctgttgttgATGTATTTAAAGAAGAAATGGTGAAATGTGTAATTATGTATTTAAGGTGGGCGGTCACTTGACTCAGTCTTTAACACCGTTGTGGTCTCACCACTTTAGAGTCCAGTTCATTCATGAGgacattattttaaagaatagAGAACCGCGGTTCCTCTCTTCAGTGCAGTTTTCTCTGAGCGTTGGCACCTTCTGCGTGAATCTGACTTCCATCATGTGTGAGACCATACTGGAAGGTTCCGGGTCCTGGACTGGTTAGTATGGAGTCTTTGCAGATCTGGGCGTGTCCAGAGGTTTTGCTGGCGTAAGTTAGTCCGGGGAAGGGTAAAGCATGCAGAGGGACTAAGCTTGTTAAACCTCCAGATTGTGGAACGTTGGGGTAAGACGAGGCCTGGAGGGAGAGGGATGGAGTCGGGAGAGCTGGATCCCCACAAGAACTTTCCACAGCTGCTACGGCCACAGAAACTGGTGCTTTGCAAAACGAGGTGGTGGTGAGCAGTCTGGCCACACCCTGCACCGCCGCAGAGTCtccttcagcagcagcaggtggaGCTACCAGCATCAGCTTCTGAGCTTTTTTCTCCCCTGCAGGAACTCGCTTCAGGGCTGAAGCCACTCCAGGACTGGACGAGATCCTCTGAGCCGAATCAACAGGAAGTGCTGCCCCTGTGCTGCCCGTCTGAACGCCGGGCAGAGGCTTCCCATCTACTGCAGGCTGAGATACCCTATTCCTGCCTTGAGAGGATTTTCCCACATCTCCTCTGATCTGCTGCAGCTCCGGCTGCGGAGGAGAAAAATAAGCAGACACTTGTGTGTCTATTGGGGGTCTGCTCACAGTGTTCTGGGGGGCTTGTTGGATGCTCAAAGGCAGACTGATACGCTTGCGCTGAGGTGCAGCAGCTCCTTGTAACCCTTTCATCCCTGGAGTTGGGTGGATCTCCCCAGATTTCTCAGAGATGAAAACAATCTGTT
>TU143125
AGACATACATTATAAATGGAAAGATCAGGCCATCCATATTgtttgcatattttatttataaacaatacCATCTTATCAGCTTAGCTCAGTCACATTTTAGGACATACAAAACTACATGCAGTGCTATTACTCCCAAGTTTGTGCTTAATGCAACACCCTCTTCCTTAAGAATCCCtgagacaataaataaatggcattttacatttcaggaaAAAAGCAAAACTAATTCAGCCGTCCATTAATTAAGACTCTTTTCATTGTGAGCGCCTTGCGTTCATTTTGTAAATTACCTTCAGTCCATGTcacataaaacataaatcagTGCCAActgatgaaagaaagaaagactaaCTAAAGAAAAACTAATCAGCTAAAGAGTTAACTGTCTAAAGCTGAGGAGATCAGTCTCGTACACATACTGCTCTACAAGGTCTTTGGAAAGTACATGGAATGCTGTTTAAAGCATAATGTTAGGAGCTGATAGGCaggaactaaaaaaataagaaggaTTGTGAAAAGTAATAGAGAATTTTAGACAGGAAAGGGTAAAAAGAACAAAGTGCCTTAAGCCTACGTTCTTAAGTGCAGATATTACAGTAAAGACAAAAAGAACTCAAAGgagaaacatttaaaagatcTCAGGCAGAAGAAGACGACGAAGAAGAAAGCATCAGCTTCAAAAGTCCTTAAGTGCAGATATTACAGTAAAGACAAAActcaaaaaggaaaagaaaatattattattgttattaataatcatgattattattaaaggCACCACTACCACATTCTTGATGCACTGATGGTCACATGCCTAGTCTggattagtagtaatagtagcacaTAGTCTGAACTGGGTTATTTTCACGCGTGTAGCTTCTCCATCAGCTTAGTGTAACActtttcagtttctgttgttgATGTATTTAAAGAAGAAATGGTGAAATGTGTAATTATGTATTTAAGGTGGGCGGTCACTTGACTCAGTCTTTAACACCGTTGTGGTCTCACCACTTTAGAGTCCAGTTCATTCATGAGgacattattttaaagaatagAGAACCGCGGTTCCTCTCTTCAGTGCAGTTTTCTCTGAGCGTTGGCACCTTCTGCGTGAATCTGACTTCCATCATGTGTGAGACCATACTGGAAGGTTCCGGGTCCTGGACTGGTTAGTATGGAGTCTTTGCAGATCTGGGCGTGTCCAGAGGTTTTGCTGGCGTAAGTTAGTCCGGGGAAGGGTAAAGCATGCAGAGGGACTAAGCTTGTTAAACCTCCAGATTGTGGAACGTTGGGGTAAGACGAGGCCTGGAGGGAGAGGGATGGAGTCGGGAGAGCTGGATCCCCACAAGAACTTTCCA

Function

symbol description
ubn1 Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human UBN1 (ubinuclein 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143123 True 1816 lncRNA 0.44 3 23580228 23586217
TU143125 False 1361 lncRNA 0.39 2 23580155 23583983

Neighbor

gene id symbol gene type direction distance location
chtf18 chtf18,LOC107725360 coding upstream 27457 23524716 ~ 23552698 (+)
plk1 plk1,LOC107722962 coding upstream 89950 23480456 ~ 23490205 (+)
LOC107197111 NA coding upstream 120640 23454456 ~ 23459515 (+)
LOC103041889 NA coding upstream 141052 23434867 ~ 23439103 (+)
cacng3 cacng3,LOC108439097,LOC108258515 coding upstream 170137 23400271 ~ 23410018 (+)
LOC103035907 NA coding downstream 46162 23632379 ~ 23638888 (+)
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding downstream 384474 23970691 ~ 24115461 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding downstream 1490719 25076936 ~ 25102573 (+)
LOC103022503 NA coding downstream 1786589 25372806 ~ 25374832 (+)
LOC103023109 NA coding downstream 1796655 25382872 ~ 25386300 (+)
G105906 NA non-coding upstream 83599 23494075 ~ 23496556 (+)
G105891 ndufab1,LOC107590767 non-coding upstream 126929 23445874 ~ 23453226 (+)
G105879 NA non-coding upstream 168111 23411283 ~ 23412044 (+)
G105872 NA non-coding upstream 182293 23390733 ~ 23397862 (+)
G105804 NA non-coding upstream 328339 23179282 ~ 23251816 (+)
G105974 NA non-coding downstream 62213 23648430 ~ 23648659 (+)
G105984 NA non-coding downstream 102929 23689146 ~ 23689374 (+)
G105990 NA non-coding downstream 147204 23733421 ~ 23733782 (+)
G106003 LOC108439158 non-coding downstream 284195 23870412 ~ 23890084 (+)
G106022 NA non-coding downstream 346617 23932834 ~ 23933173 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 760059 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 991194 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 1296702 22255085 ~ 22283453 (+)
G105357 NA other upstream 2210951 21327192 ~ 21369204 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 2551165 21019038 ~ 21028990 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 329418 23915635 ~ 23923771 (+)
G106036 NA other downstream 400990 23987207 ~ 23989592 (+)
G106146 NA other downstream 824991 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 1775527 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 1872598 25458815 ~ 25570821 (+)

Expression


Co-expression Network