G105974


Basic Information

Item Value
gene id G105974
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23648430 ~ 23648659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143170
gaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgacattaccctggacactgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgcgccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtacgtcacccataatgttgtgtgcattgcaatatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143170 True 230 lncRNA 0.47 1 23648430 23648659

Neighbor

gene id symbol gene type direction distance location
LOC103035907 NA coding upstream 9542 23632379 ~ 23638888 (+)
chtf18 chtf18,LOC107725360 coding upstream 95732 23524716 ~ 23552698 (+)
plk1 plk1,LOC107722962 coding upstream 158225 23480456 ~ 23490205 (+)
LOC107197111 NA coding upstream 188915 23454456 ~ 23459515 (+)
LOC103041889 NA coding upstream 209327 23434867 ~ 23439103 (+)
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding downstream 322032 23970691 ~ 24115461 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding downstream 1428277 25076936 ~ 25102573 (+)
LOC103022503 NA coding downstream 1724147 25372806 ~ 25374832 (+)
LOC103023109 NA coding downstream 1734213 25382872 ~ 25386300 (+)
LOC111193564 NA coding downstream 1770881 25419540 ~ 25422258 (+)
G105940 ubn1 non-coding upstream 62213 23580155 ~ 23586217 (+)
G105906 NA non-coding upstream 151874 23494075 ~ 23496556 (+)
G105891 ndufab1,LOC107590767 non-coding upstream 195204 23445874 ~ 23453226 (+)
G105879 NA non-coding upstream 236386 23411283 ~ 23412044 (+)
G105872 NA non-coding upstream 250568 23390733 ~ 23397862 (+)
G105984 NA non-coding downstream 40487 23689146 ~ 23689374 (+)
G105990 NA non-coding downstream 84762 23733421 ~ 23733782 (+)
G106003 LOC108439158 non-coding downstream 221753 23870412 ~ 23890084 (+)
G106022 NA non-coding downstream 284175 23932834 ~ 23933173 (+)
G106023 NA non-coding downstream 289736 23938395 ~ 24021234 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 828334 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 1059469 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 1364977 22255085 ~ 22283453 (+)
G105357 NA other upstream 2279226 21327192 ~ 21369204 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 2619440 21019038 ~ 21028990 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 266976 23915635 ~ 23923771 (+)
G106036 NA other downstream 338548 23987207 ~ 23989592 (+)
G106146 NA other downstream 762549 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 1713085 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 1810156 25458815 ~ 25570821 (+)

Expression


Co-expression Network