G106220


Basic Information

Item Value
gene id G106220
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 24908744 ~ 24909029 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143458
aaatacattttagctaaagagcacttcagtgcactcttttcactacactgaattcatgtttgccaaataaagctaaatgttaaagacatacattaaaaaaggactgaattttattatttaccctGGGCGCACATGGATAAAGGCGAAGTggctcaattaatgtaattaacacaaacattaaaaaaataggtacacttgacatcttaaatcctcgtgcagcaatattaatgtgattttatcagctttctgagtcctaccgtccatcgtctgcactaataaccaggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143458 True 286 lncRNA 0.34 1 24908744 24909029

Neighbor

gene id symbol gene type direction distance location
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding upstream 793283 23970691 ~ 24115461 (+)
LOC103035907 NA coding upstream 1269856 23632379 ~ 23638888 (+)
chtf18 chtf18,LOC107725360 coding upstream 1356046 23524716 ~ 23552698 (+)
plk1 plk1,LOC107722962 coding upstream 1418539 23480456 ~ 23490205 (+)
LOC107197111 NA coding upstream 1449229 23454456 ~ 23459515 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding downstream 167907 25076936 ~ 25102573 (+)
LOC103022503 NA coding downstream 463777 25372806 ~ 25374832 (+)
LOC103023109 NA coding downstream 473843 25382872 ~ 25386300 (+)
LOC111193564 NA coding downstream 510511 25419540 ~ 25422258 (+)
LOC103025458 NA coding downstream 514683 25423712 ~ 25449279 (+)
G106217 NA non-coding upstream 813 24907148 ~ 24907931 (+)
G106205 NA non-coding upstream 110543 24797868 ~ 24798201 (+)
G106195 NA non-coding upstream 191940 24716537 ~ 24716804 (+)
G106172 NA non-coding upstream 370927 24537561 ~ 24537817 (+)
G106157 NA non-coding upstream 399351 24508542 ~ 24509393 (+)
G106248 NA non-coding downstream 302550 25211579 ~ 25212076 (+)
G106250 NA non-coding downstream 304174 25213203 ~ 25213469 (+)
G106255 NA non-coding downstream 451056 25360085 ~ 25402912 (+)
LOC103043670 NA non-coding downstream 491888 25400917 ~ 25401805 (+)
G106274 NA non-coding downstream 543108 25452137 ~ 25542268 (+)
G106146 NA other upstream 495646 24411208 ~ 24413098 (+)
G106036 NA other upstream 919152 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 984973 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2088648 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 2319783 22525257 ~ 22588961 (+)
LOC111193563 NA other downstream 452715 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 549786 25458815 ~ 25570821 (+)
LOC103037236 NA other downstream 1245388 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 3105487 28014516 ~ 28022047 (+)
G106673 NA other downstream 3157323 28066352 ~ 28066983 (+)

Expression


Co-expression Network