LOC111193565


Basic Information

Item Value
gene id LOC111193565
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25458815 ~ 25570821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143519
acacacacatttaaacacacacaatcacacacacacacacatttaaacacacaaaatcacacacacacatacacactctctctctctaatgtgtgttcttgtgttcagACGGCTGTGATCTCACACTGGATCCAAACACAGCGAGCAGAGAGCTCTCTCTGAGTGAAGAGAACAGGAGGGTGGAGAGAGGAGGATGGGGAGAGGAGCAGTCGtatcctgatcatccagagagatttgatTACTGGTCGCAGGTTCTGAGTATAGAGAGAGTTActggacgctgttactgggaggctgaGTGGAGCGGAGGAGAAGCTGATGTAGCTCTGagttataaaaccatcagcaggAAAGGATTCAGTTCAGACTCTCTGTTTGGAGAGAATGAAAAGTCCTGGAGTCTGGAGATCGATAATAACAGTTACTCTGTTCATCACAATAATAACAGCACTGatctccctcctcctccctctccctctaacagagtaggagtgtatgtggactgtcccgccggcactctgtccttctacacCATCtcctctcatacacacacaccctcacacacccaaacactcacacacctacacacattcTACACCTCATTCACTGAACCGCTCTATGCTGGGTTTTATGTTTATGATGGCTCCTCAGTGCGTCTGTGTGATATAgaatagtgtgtgtttgtttatgtgtgtgtgtgagagagatggattgtgagtgatggtgtttgtgtgaaagtgtgtatgtgcttTggagtgtatttgtgtgtgc
>TU143520
acacacacatttaaacacacacaatcacacacacacacacatttaaacacacaaaatcacacacacacatacacactctctctctctaatgtgtgttcttgtgttcagACGGCTGTGATCTCACACTGGATCCAAACACAGCGAGCAGAGAGCTCTCTCTGAGTGAAGAGAACAGGAGGGTGGAGAGAGgaggagaGTATCAGTCGtatcctgatcatccagagagatttgatgGGTGGGATCAGGTTCTGAGTATAGAGAGAGTTActggacgctgttactgggaggctgaGTGGAGCGGAGGAGAAGCTGATGTAGCTCTGagttataaaaccatcagcaggAAAGGATTCAGTTCAGACTCTCTGTTTGGAGAGAATGAAAAGTCCTGGAGTCTGGAGATCGATAATAACAGTTACTCTGTTCATCACAATAATAACAGCACTGatctccctcctcctccctctccctctaacagagtaggagtgtatgtggactgtcccgccggcactctgtccttctacacCATCtcctctcatacacacacaccctcacacacccaaacactcacacacctacacacattcTACACCTCATTCACTGAACCGCTCTATGCTGGGTTTTATGTTTATGATGGCTCCTCAGTGCGTCTGTGTGATATAgaatagtgtgtgtttgtttatgtgtgtgtgtgagagagatggattgtgagtgatggtgtttgtgtgaaagtgtgtatgtgcttTggagtgtatttgtgtgtgc
>TU143521
acacacacatttaaacacacacaatcacacacacacacactctctctctctaatgtgtgttcttgtgttcagACGGCTGTGATCTCACACTGGATCCAAACACAGCGAGCAGAGAGCTCTCTCTGAGTGAAGAGAACAGGAGGGTGGAGAGAGgaggagaGTATCAGTCGtatcctgatcatccagagagatttgatgGGTGGGATCAGGTTCTGAGTATAGAGAGAGTTActggacgctgttactgggaggctgaGTGGAGCGGAGGAGAAGCTGATGTAGCTCTGagttataaaaccatcagcaggAAAGGATTCAGTTCAGACTCTCTGTTTGGAGAGAATGAAAAGTCCTGGAGTCTGGAGATCGATAATAACAGTTACTCTGTTCATCACAATAATAACAGCACTGatctccctcctcctccctctccctctaacagagtaggagtgtatgtggactgtcccgccggcactctgtccttctacacCATCtcctctcatacacacacaccctcacacacccaaacactcacacacctacacacattcTACACCTCATTCACTGAACCGCTCTATGCTGGGTTTTATGTTTATGATGGCTCCTCAGTGCGTCTGTGTGATATAgaatagtgtgtgtttgtttatgtgtgtgtgtgagagagatggattgtgagtgatggtgtttgtgtgaaagtgtgtatgtgcttgtgtgtgtgtgtgtgtgtgtgcaagtgagTGTGCACTTATTGAATCTTCATCATTATAATCTACAATTAAAttgattatgtaaatatattgtttatgattGAGTTTGTTATTAGTAATTAAATAGTTAtaattgtaaatatattgttaatgattgttagtttattgtttattattgg
>XM_022674931.1
CTCTTTATACAGTTTTGCTATGTGTAAACTCAGTGAAAAGTCCTGTGAGACCCTGCAGTCAGTTTTACAATCAGAAAACAACTctctgaaagagctggacctcagtagaaatgacctgcaggattcaggactGGAGAAACTGTGTGCTGGACTAAAGAGTCCTCACTGTAGACTGGAGATactcagAATTGCTTATTGTAAACTTCAGGGACCTTGCTGTAAAACTTTGGGATcagttttaaacctggaaaaGAACTCACTGAAAGaactggacctcagtaacaatgacctgcaggattccATAGAGAAACTCTCTGATGGACTCAAGaatacacactgtaaactggaaaCTCTCAGACTAGCTTTGTGTAATCTTGGGGAACAGTCCTGTGACAGTCTGGGATCAGTTTTAAAACTGGAAACCTCCTCTCTGAAAGTGCTGGATCTCAGCAataatgacctgcaggattcaggagtggagaaACTCTGTTCTgaactgaagagttcacactgtaaactggagataCTCAGGTTATCTGGTTGTATGATCACAGAGAAAGGATGTTCATCTCTGGCTTCATCTTTAAGTTCAAACCTGAAAGAACTGGATCTGACCTACAATAACCCAGGAGAGTCTGGAGTGAAAGGGCTCTCTGATAAACTGAAGGATCCACACTACAAACTCAGCACACTCaggtatgtgagtgtgtatgtaagtgtgtTGACATTGGAAAAGTACGGCTGTGATCTCACACTGGATCCAAACACAGCGTACAGAGAGCTCTCTCTGAGTGAAGAGAACaggaggatggagagaggagaGTATCAGTCGtatcctgatcatccagagagatttgatgGGTGGGATCAGGTTCTGAGTATAGAGAGAGTTActggacgctgttactgggaggctgaGTGGAGCGGAGGAGAAGCTGATGTAGCTCTGagttataaaaccatcagcaggAAAGGATTCAGTTCAGACTCTCTGTTTGGAGAGAATGAAAAGTCCTGGAGTCTGGAGATCGATAATAACAGTTACTCTGTTCATCACAATAATAACAGCACTGatctccctcctcctccctctccctctaacagagtaggagtgtatgtggactgtcccgccggcactctgtccttctacacCATCtcctctcatacacacacaccctcacacacccaaacactcacacacctacacacattcTACACCTCATTCACTGAACCGCTCTATGCTGGGTTTTATGTTTATGATGGCTCCTCAGTGCGTCTGTGTGATATAgaatagtgtgtgtttgtttatgtgtgtgtgtgagagagatggattgtgagtgatggtgtttgtgtgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143519 False 771 lncRNA 0.46 3 25462507 25570821
TU143520 False 765 lncRNA 0.46 3 25462507 25570821
TU143521 False 886 lncRNA 0.42 4 25458815 25556234
XM_022674931.1 True 1356 mRNA 0.44 6 25519671 25556012

Neighbor

gene id symbol gene type direction distance location
LOC103025458 NA coding upstream 9536 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 36557 25419540 ~ 25422258 (+)
LOC103023109 NA coding upstream 72515 25382872 ~ 25386300 (+)
LOC103022503 NA coding upstream 83983 25372806 ~ 25374832 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding upstream 356242 25076936 ~ 25102573 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding downstream 169406 25740227 ~ 25759643 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 193026 25763847 ~ 26023673 (+)
LOC111193484 NA coding downstream 504877 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 618144 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 674418 26245239 ~ 26248347 (+)
G106255 NA non-coding upstream 55903 25360085 ~ 25402912 (+)
LOC103043670 NA non-coding upstream 57010 25400917 ~ 25401805 (+)
G106250 NA non-coding upstream 245346 25213203 ~ 25213469 (+)
G106248 NA non-coding upstream 246739 25211579 ~ 25212076 (+)
G106220 NA non-coding upstream 549786 24908744 ~ 24909029 (+)
G106370 NA non-coding downstream 139395 25710216 ~ 25710456 (+)
G106391 NA non-coding downstream 384116 25954937 ~ 25960449 (+)
G106380 NA non-coding downstream 455423 26026244 ~ 26030682 (+)
G106446 NA non-coding downstream 652315 26223136 ~ 26228689 (+)
G106466 NA non-coding downstream 714071 26284892 ~ 26285416 (+)
LOC111193563 NA other upstream 89376 25361744 ~ 25369439 (+)
G106146 NA other upstream 1045717 24411208 ~ 24413098 (+)
G106036 NA other upstream 1469223 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1535044 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2638719 22810079 ~ 22820096 (+)
LOC103037236 NA other downstream 583596 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2443695 28014516 ~ 28022047 (+)
G106673 NA other downstream 2495531 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 3132246 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3578244 29149065 ~ 29159680 (+)

Expression


Co-expression Network