G106642


Basic Information

Item Value
gene id G106642
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27915547 ~ 27918196 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144061
GCTTTTTGACGGCTGGGGGAGGAGCAGCTTCCTTCGGTTtACTAGCTCCCAGCTTGATGGAGATGGGGGCAGGCTTCTTCAGAATCGGGCTGGTCGTACTGATGCTCGGTTTGGAGATTTTGAAGGGCACGGCCTGTTTCCTGcgctgatcccccgccgtactGCTGCCTTCGGCCGGGCGCTTCCCCAGGCCTCCCCCGGGGCCGGTGCTGGAAGAGACCGTGTTACTTTTCGCACTGCCTTCCTTCTCCTCTGGTCCTGCTGGAGGCGAAACAACTTACCAAGGTGAGCGACTGTAGCCATGGTGACCAAAGGAGAGCTACAGTTACCTGGAAGATGAGGGATGCCAGGAGGACCTGCTCAGAAGTGCTGCTGGTGAGCATAACAATGGAGGAACTTCTACTGCTGCattaaccaccaccaccatcatcttACAGAACTAACCAACACTCTAACTTTCATCTCTCAACATCCTGTTACAAACCAGGAAAAGTCATATATCCTCTTGTGGTTTACAGTTTAGAAACATTACTCAACCAACAATtaaatatagttaaataaaGTTCAAAACTTGATCTGTTTGCTTTTCAtagtatataaatattacattatgtAGAATGTTAGCTAACAGTTGATAACTACCAGTATCATCTAGTCACCAGGTCTTGATATCTGTTATtccttaatatttattaaacacccACTCTGAATAAACATGCTTAAATATTAACCATTGGACTTTTATCTACATGTTGGGACTAATAAATAAGAGTTGTCAatagccctatccagacgggattagtttctcaggggggcgtctgtgaaaaatgacacacttctactcagtgataaaactcctgcatctggaccacaattaaaaaaaaaaacagaaaatcaggaggcccagtgagtttttttttttaaggctttcTCGTTCACGtgacatcgtgttcagtagctcctctatttcctattgctgttgtgtttttaacgtaaatctccatggaaacacacaaccaaagtgtaattacggtgcgtggcagtggacaaatagctatttaatTAAACACGAGGAGATGAAACTCAAACGTGgatctggacgggactaaaattaccggaggaccataGAGTTTATTAAAAGGATTttatcacagaggataaaaaaaaaacataaaagagaaaattaccccagaaccccctgagaaacgaatcctgCCGGGATAGGGCTAATAACTCTAAAAAAGTTGAATAAAtgtcaacatttaatataactTAGGCATTAAAATACATCATCATACATTATCACACAGTGCAGCACTAATGTCTCTTTTGAGCATCAGTGGCAAGCCACAACCTTCCTCGCCATAAAGTGTAACGTAGCATTGCATAGTCTATCAAAGTGATTAAAAGTAGCATACCTGCAGGGAGAGCAACATAAAActagaaatatatattagaaatcactgaaaagttagtttat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144061 True 1480 lncRNA 0.42 2 27915547 27918196

Neighbor

gene id symbol gene type direction distance location
LOC103043862 mx1 coding upstream 9902 27890718 ~ 27905645 (+)
LOC103047315 LOC108440455 coding upstream 107463 27802084 ~ 27808084 (+)
arglu1 NA coding upstream 147280 27759212 ~ 27768267 (+)
LOC111193461 cpo,LOC108258336 coding upstream 157450 27745088 ~ 27758097 (+)
LOC103046391 NA coding upstream 176449 27729513 ~ 27739098 (+)
LOC111193463 NA coding downstream 75803 27993999 ~ 27999852 (+)
LOC111193464 NA coding downstream 771359 28689555 ~ 28692305 (+)
LOC111193465 NA coding downstream 774648 28692844 ~ 28697096 (+)
LOC111193466 NA coding downstream 783816 28702012 ~ 28702921 (+)
LOC111193571 NA coding downstream 867768 28785964 ~ 28791991 (+)
G106648 NA non-coding upstream 1286 27912306 ~ 27914261 (+)
G106646 NA non-coding upstream 8336 27906956 ~ 27907211 (+)
G106644 NA non-coding upstream 9262 27905785 ~ 27906285 (+)
G106636 NA non-coding upstream 88699 27826587 ~ 27826848 (+)
G106572 NA non-coding upstream 281337 27630943 ~ 27634210 (+)
G106650 NA non-coding downstream 8064 27926260 ~ 27936905 (+)
G106651 NA non-coding downstream 19014 27937210 ~ 27975192 (+)
G106674 NA non-coding downstream 189917 28108113 ~ 28111177 (+)
G106675 NA non-coding downstream 194281 28112477 ~ 28132272 (+)
G106710 NA non-coding downstream 381392 28299588 ~ 28300251 (+)
LOC103037236 NA other upstream 1743746 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 2344726 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 2546108 25361744 ~ 25369439 (+)
G106146 NA other upstream 3502449 24411208 ~ 24413098 (+)
G106036 NA other upstream 3925955 23987207 ~ 23989592 (+)
G106661 lancl1 other downstream 96320 28014516 ~ 28022047 (+)
G106673 NA other downstream 148156 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 784871 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 1230869 29149065 ~ 29159680 (+)
G107117 NA other downstream 1862130 29780326 ~ 29780927 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_04131136_04133439 PCNP misc CI01000299 null 4131060 ~ 4133941 (+)
rainbow trout (Oncorhynchus mykiss) G385805 NA unknown NC_048569.1 CM023223.2 28416605 ~ 28417555 (+)
striped catfish (Pangasianodon hypophthalmus) G369928 pcnp non-coding NC_047620.1 CM018566.1 2560880 ~ 2562458 (-)