LOC103027743


Basic Information

Item Value
gene id LOC103027743
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28703067 ~ 28724026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144257
CAGAACAGGAGGTGAAGAACGACTGAAACACATCAGTAAGGAGAACTCGGGTCTGATCACCTACATTAACAGATATTTGATTCTAGAAATGGATCAGAAGTTGATCTTGGTCTTCTTACTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGAATGAGAATAAAACCTGGACTGAAGCTCAGAACTACTGCAGACAGAACTACACTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGAAGGGTAAAGGTGGAGAATTTGTTTGGATTGGTCTGAACAGAGGGGATACTGGGAAATGGCGGTGGTCTCTGCCAGATGGAAATTTCTACACTGTAGGAGATAAAGACCAGAACTGGAGAAATGGAGAACCAAATAATCTTGGAGGAAAGGAGTTCTGTGCTGCGATGTATGAACAAGATGGAAAGTGGTTTGATGAAAACTGTGAGAAAAAACATACTTCCGTATGTTTTAATG
>TU144262
CAGCTCTGGGTGAAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCGCCCTCAGCTTCTGGTTCTGGGTGGGTGGAGAGTCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGACTGAAACCAGGTGTGAAGAATCTTCTGGTCCAGAA
>TU144285
AAACCAAACACTGAGAGATACATATTCATTAATGAAGAAAAGACCTGGCATGAAGCTCAGAGCTACTGCAGAGAACATCACACAGACCTGGCCAGTGTGAGGAACGGGGGGGGGAATATGGAAGATCAAAGCAGGAAATGGTGATAATTTCTGGATCGGCCTGTTTAAAGACTCCTGGAAGTGGTCAGATCAGAGCAGCTCCTCATTCCGATACTGGAAGTCTAATCAGAcagataataatgataaatgtGCTGCAGCTTCTGTGAAGGACCAGGGTCAGTGGCATGATATAGGTTGTGAGGAACCGCACCCTTTCATCTGCCATGAGAATAAGCTGATCCTGATCCAGGAGAATCTGAGCTGGGCAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGGAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCACCCTCAGCCTCTGGTTCTGGATGAGTGGAGACTTTATCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGACTTAAACCAGGTGTGAAGAATCTTCTGGTCCAGAATCAGCATCTCTACAGCTCTACCACTTTCTCTGTATATTAGCTTAAAGTAGTGCTTTATACTGTATGAGCTGTAGC
>XM_022674375.1
TGATTGCGTGCAAGAGAGGTGGAGCGATATTAGAGAGAATAAtaaagaaagaggagagataCTGTACAGATCAGAACAGGAGGTGAAGAACGAGGGAGACACATCAGGACGAAGAAATCAGATCTGAACGTCTAGATTCCAGAAATGGATCAGAAGTGGATCTTAGTTTTCTGGCTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGGATCAGAGTAAAACCTGGACTGAAGCTCAGAGATACTGCAGACAGACCTACACTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGAAGGATAAAACTCAAGCCTTTGTGTGGATCGGTCTGAACAGAGGGGACACTGAGAAATGGAGGTGGTCTCTGCCAGACGGAAATTTCTACACTGTAGAAGATAAAAACCAGACCTGGAGAAGTGGAGAACCAAATAATTATGGAGGGAATGAGTTCTGTGTTTCGATGTATAAACAAGATGGAACGTGGTTTGATGTCAGCTGTGAGAATACATATACTTTTGTGTGTTCCAACGaaaataaaccaaaCGCTGAGAGATACGTATTCATTAATGAACAAAAGACCTGGCGTGAAGCTCAGAGATACTGCAGAGAACATCACACAGACCTGGCCAGTGTGAGGAATGAGACTGAGAGATGGCAGGTCCATGCAGCAGGAAATGGTGTTAATTTCTGGATCGGTCTGTTTAAGGACTCCTGGAAGTGGTCAGATCAGAGCAGCTCCTCATTTCGGTACTGTGAGTCTAACCAGCCAGATAATAATGATCTTACAAAATGTGCTGCAGCTTCTGTGAAGGACCAGGGTCAGTGGCATGATATAAAATGTGATGAACAGTACCCTTTCATCTGCCATGAGAATAAGCTGGTCTTGATCCAGCAGAATCTGAGCTGGAAAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGAAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCGCCCTCAGCTTCTGGTTCTGGGTGGGTGGAGAGTCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGaaaataaaccaaaCGCTGAGAGATACGTATTCATTAATGAACAAAAGACCTGGCGTGAAGCTCAGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGAAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCGCCCTCAGCTTCTGGTTCTGGGTGGGTGGAGAGTCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGGAACGCGATCCCGTCCTGGAGCGGTCCAGGACTGGGTGGTGGAACATCAGGCCAGGTTTAAGTTGGGGTTCGAGGAAGCCCGTGAGCAGCTGTTGGTAGCTGCTGGTCGCCAGAAGGAACGACATGATCAGTGGGTTCGGGAATTGCCCTTATGGGAAGCATTAACAGATATTAGTAGATATTTGATTCTAGGAATGGATCAGAAGTGGATCTTAGTCTTCTTACTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGGATCAGAGTAAAAACTGGACTGAAGCTCAGAACTACTGCAGACAGAACTACTCTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGAGGGGTAAAGGTGGAGAATTTGTTTGGATTGGTCTGGACAGAGGGGACACTGGGAAATGGAGGTGGTCTCTGCCAGATGGAAATGCCTACACTGTAGAAGATACAGACCAGAACTGGAGAAGTGGAGAACCAGATAATCGTGGAGGAATAGAGTTCTGTGTTTCGATGTTTAAACAAGATGGAAAGTGGTTTGATGACAACTGTGAGAGTAAACatacttttgtgtgttttgacgAAAATATACCAAACACTACGAGATACGTATTCATTAATGACAAAAAGACCTGGCGTGAAGCTCAGAGCTACTGCAGAGAACATCACACAGACCTGGCCAGTGTGAGGAATGAGACTGAGAGACAGCAGATCACTGCAGGAGGAAATGGTGATAATTTCTGGATCGGCCTGTTTAAGGACTGGAAGTGGTCAGATCAGAGCAGCTCCTTATTTCGATACTGGGAGTCTAACCAGCCAGATACTAATGATAAATGTGCTGCAGCTTCTGTGAAGGACCAGGGTCAGTGGCATGATATAAAATGTGGGAAGCAGTGCCCTTTCATCTGCCATGAGAATAAGCTGATCTTGATCCAGGAGAAGCTGACCTGGAAAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGAAGGATGTGGCTCAGAATGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCACTCAGGGATTCTGGTTCTGGGTGGGTGGAGAGTCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGTGCAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGAAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGCCGCTGACACGGGAAGAGCTGAGCCACCAGGAGTCGCCAACGCGGGGACCACTGAGCTGCTAGGAGTCGCCAATGCGGGAAGAGCTGAGCCACCAGGAGTCGCCAACGTAGGAAGAGTTGAGGCACTGGGAGTTGCCAACACGGACACCGCTGGGCTGCTGGTAGTCGCCAGTGCAGGAAGAGCTGAGCCAGCAGGAGGCGGCAACTCGGGAAGAGCTCCGCCACCGAGAGTCGTCGAGACAGGGACCACTGAGCTGCTTGGAGTTGCTGATGCGGGAACCGGTAAGCTGGCGGCAGTCACCGATGCAGGAACCGGTGAGCCGCCGGGAGTCGCCACCGTGGGGACCAGTGAGCCGACAAGAGCAGGCAACACAGGAACTGCTGAGCTGGGTCCGCTGAGCCGGCGATTCGCCAGTGCAGGAAGAGCTGAGCCACCAGGAGTCGCCAACGTAGGAAGAGTTGAGGCACTGGGAGTTGCCAACACAGAAACAGAACAAGAACCAGACAGTGGAGCAGTGTTGGCTCACATAGACTGTGTGATAACAGGAGGTGAAGAACGACTGAAACACATCAGTAAGGAGAACTCGGGTCTGATCACCTACATTAACAGATATTTGATTCTAGAAATGGATCAGAAGTTGATCTTGGTCTTCTTACTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGAATGAGAATAAAACCTGGACTGAAGCTCAGAACTACTGCAGACAGAACTACACTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGAAGGGTAAAGGTGGAGAATTTGTTTGGATTGGTCTGAACAGAGGGGATACTGGGAAATGGCGGTGGTCTCTGCCAGATGGAAATTTCTACACTGTAGGAGATAAAGACCAGAACTGGAGAAATGGAGAACCAAATAATCTTGGAGGAAAGGAGTTCTGTGCTGCGATGTATGAACAAGATGGAAAGTGGTTTGATGAAAACTGTGAGAAAAAACATACTTCCAAAAGAAAACCAAACACTGAGAGATACATATTCATTAATGAAGAAAAGACCTGGCATGAAGCTCAGAGCTACTGCAGAGAACATCACACAGACCTGGCCAGTGTGAGGAACGGGGGGGGAATATGGAAGATCAAAGCAGGAAATGGTGATAATTTCTGGATCGGCCTGTTTAAAGACTCCTGGAAGTGGTCAGATCAGAGCAGCTCCTCATTCCGATACTGGAAGTCTAATCAGAcagataataatgataaatgtGCTGCAGCTTCTGTGAAGGACCAGGGTCAGTGGCATGATATAGGTTGTGAGGAACCGCACCCTTTCATCTGCCATGAGAATAAGCTGATCCTGATCCAGGAGAATCTGAGCTGGGCAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGGAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCACCCTCAGCCTCTGGTTCTGGATGAGTGGAGACTTTATCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGGTTAGATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144257 False 518 TUCP 0.42 2 28716602 28720280
TU144262 False 298 lncRNA 0.54 3 28706045 28707099
TU144285 False 803 lncRNA 0.48 3 28722947 28724026
XM_022674375.1 True 4730 mRNA 0.49 17 28703067 28723826

Neighbor

gene id symbol gene type direction distance location
LOC111193466 NA coding upstream 146 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 5971 28692844 ~ 28697096 (+)
LOC111193464 NA coding upstream 10762 28689555 ~ 28692305 (+)
LOC111193463 NA coding upstream 703215 27993999 ~ 27999852 (+)
LOC103043862 mx1 coding upstream 797422 27890718 ~ 27905645 (+)
LOC111193571 NA coding downstream 61938 28785964 ~ 28791991 (+)
LOC111193468 NA coding downstream 87798 28811824 ~ 28815508 (+)
LOC111193570 NA coding downstream 117153 28841179 ~ 28865225 (+)
LOC111193469 NA coding downstream 401847 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 484525 29208551 ~ 29241597 (+)
G106760 NA non-coding upstream 29131 28667114 ~ 28673936 (+)
G106754 NA non-coding upstream 78869 28623971 ~ 28624198 (+)
G106745 NA non-coding upstream 124578 28578211 ~ 28578489 (+)
G106718 NA non-coding upstream 316625 28385478 ~ 28386442 (+)
G106710 NA non-coding upstream 402816 28299588 ~ 28300251 (+)
G106791 NA non-coding downstream 2694 28726720 ~ 28727094 (+)
G106792 NA non-coding downstream 3260 28727286 ~ 28727720 (+)
G106795 NA non-coding downstream 10269 28734295 ~ 28734971 (+)
G106799 NA non-coding downstream 52520 28776546 ~ 28777037 (+)
G106800 NA non-coding downstream 54156 28778182 ~ 28778480 (+)
G106673 NA other upstream 636084 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 681020 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2531266 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3132246 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 3333628 25361744 ~ 25369439 (+)
LOC111193573 NA other downstream 425039 29149065 ~ 29159680 (+)
G107117 NA other downstream 1056300 29780326 ~ 29780927 (+)

Expression


Co-expression Network