G106803


Basic Information

Item Value
gene id G106803
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28809335 ~ 28865069 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144326
gagctatacagagacacctgagcactttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgacctttaagccAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGACAAAACCGGACTGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATACTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAGTGATAAATTCA
>TU144328
CAGCTGTGAAGTTAAAGACAAAACCGGACGGACCTTCAGTTGGTataaaaatgaggaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACCACTAAATatgAAGAAGAGCTCATGCTAAACAGCTCTCCACACTCTCCTACACCTCTCCAGACTCAGCAAACATAGAAGATTAATGCAGGATTTCATCCAGCTCCTCCCCAACACCCTAAAATCTCCAATTATGAAATACTTTTGAACACATCTGTACATGCAGCtaaaacagggagcctagtgcatctcacatttatcaacattaacatttataggactcctaagcttttgttcttaatgacaTTGCTTTTACTTCTATACTTTTTAAaccacttttacacttttacttgagttaaaagcttaagaaatattttaaactctagtatctttACTTCTACTGgaataacacattttttgttttgatgcTGCATACTAT
>TU144330
gagctatacagagacacctgagcactttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgacctttaagccAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGACAAAACCGGACTGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATACTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAGTGATAAATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144326 False 328 lncRNA 0.38 2 28809335 28814062
TU144328 True 548 lncRNA 0.36 3 28812772 28865069
TU144330 False 328 lncRNA 0.38 2 28809335 28812932

Neighbor

gene id symbol gene type direction distance location
LOC111193571 NA coding upstream 17344 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 106414 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 112239 28692844 ~ 28697096 (+)
LOC111193464 NA coding upstream 117030 28689555 ~ 28692305 (+)
LOC111193463 NA coding upstream 809483 27993999 ~ 27999852 (+)
LOC111193469 NA coding downstream 260804 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 343482 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 552153 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 673268 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 698127 29563196 ~ 29588122 (+)
G106800 NA non-coding upstream 30855 28778182 ~ 28778480 (+)
G106799 NA non-coding upstream 32298 28776546 ~ 28777037 (+)
G106795 NA non-coding upstream 74364 28734295 ~ 28734971 (+)
G106792 NA non-coding upstream 81615 28727286 ~ 28727720 (+)
G106791 NA non-coding upstream 82241 28726720 ~ 28727094 (+)
G106817 LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913 non-coding downstream 88517 28953586 ~ 29063678 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding downstream 107663 28972732 ~ 28974394 (+)
G106822 NA non-coding downstream 185366 29050435 ~ 29052453 (+)
G106819 NA non-coding downstream 187462 29052531 ~ 29058905 (+)
G106821 NA non-coding downstream 199049 29064118 ~ 29073452 (+)
LOC103027743 NA other upstream 85309 28703067 ~ 28724026 (+)
G106673 NA other upstream 742352 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 787288 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2637534 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3238514 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 283996 29149065 ~ 29159680 (+)
G107117 NA other downstream 915257 29780326 ~ 29780927 (+)

Expression


Co-expression Network