G106822


Basic Information

Item Value
gene id G106822
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29050435 ~ 29052453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144366
ctcgttttttttataattcactttatttcagatatatatagaataaattCATTTGTGGAATAGAAACTGGCAGGCAGTCTTTTTGATGGGTAATGGAAATGAGTGGATGGTTCAGGGGAAATGAGAGAACTCCTCCTTGGTTTAATAATACGTCTCTTTTTCCACCCAGCCTCTGGATTCCGTCTAAGGAGGTATCTTCTCGCCTCATCATAAAGGAAGATGAGCAGTGAATATGGGAAAGCACAGAACCACCAGCATGGCCTAAACGGAATAAGACATAACTTTAAACATAATGTCACTGATATATATGACATACAAACTTCATAGGACCCTATTCATGAGGGATAGACGATATGGCATCCACATGTAaattattaatacaattttagggtatttttctaataacaatacaaaaatacatggttaaattgtatttagtatatttacactACTGGTCAAAGTAAAAACAcctattttttcagtttattttggccatttaagctcttcaggtccagttaatatctgtaaaatattacaaaatccaAAGTAAGCTAAAGTAAATTGCTTGGGCCTTTTAGGAAAACAAATGGACTAAAAAATTTTTAcaaaagtatattgtaaaaaaaacaggaaaaaacgTTTAGTCtctaaataattgttttaaaaagaggGGGTTATTTTTAGCAAACAATACATGGGTTAACATATTACAGCTGGTAggtagcaatggaaataaacagagcttttcaaatggttttaaaagaaaatgtcaatTTCCAAAGTGTTTTTCTGTAGTAAATCAGtaaattcacactttcatcatcataataactagaaaaaaaacacagaaacacagagagaaacactctgtaactatttagagaaattacagatgaaacCAGAGAGCAGTGAgaactgtttcctacaccttcaaataaaaacTCTTTTAAACTGGAGGAAAttgctacaggaagagtcacgtctggctgacccacatggaaacagcagctttagctgtttaaaatgtttagctcagattaaaattgtactaagtctcagtttcagtagTGTAGAGAACAATAAGAGGTCTGACAGATGAAAAACTGCAGTAATTAAGTCATTACTAAGATGACAAAATACAGCATACAGCACTGCAGCTACTGGACAACTAAACAATAGGGGTGTTCttaaacttttgaccggtagtgtATACCTAGTTgtactgtcatgtctggtgctgaatgCACACCTGTGTTCCcctcactcagctctacctgcgatttCCAAGCttccaactacaatacccagaacgcacctcaccatgacatcacacacactcccgatcacatggtACACCGCAtgacacctccaggaagtcctgagtaCTGATTACCATTCAGTATAAATAGACCAGGCTCACGCTCACTCCTCGCCGAGTAATTGTATTGGTTCTACCCtgcattacaaagcgtttcCATTGCCTGATTGTTATTTTCGTGTATGATCCTTTTCCGTGTTTttccgactttgatttttgccttgcccgtGTATTGGatattctgtgtatgacctggagTGTGTCTCACttggatttttgcctactcTGTGATACTCTctgctcgtgtatgaactctggactgtctcccgtttatggtatggtttcccCGCTCATTGTTTCTCTGGTATTGACCTGGCTTGTTTTGACTACCCCTGCtgaatcttttaataaaagatttTTATCGTATCTGCACAAGTCTCCTCCTTGTCTGGCCCTGGCATgtacacaaaataaattatgtaacataaaaatatgtaacAAAACTAAAGTGTAGAATATTGTGTTCaagcatttaaacaaatatttaaaaaataatattaaattttcacagtaaaaag

Function

GO:

id name namespace
GO:0015291 secondary active transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU144366 True 1896 lncRNA 0.36 3 29050435 29052453

Neighbor

gene id symbol gene type direction distance location
LOC111193570 NA coding upstream 185210 28841179 ~ 28865225 (+)
LOC111193468 NA coding upstream 234927 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 258444 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 347514 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 353339 28692844 ~ 28697096 (+)
LOC111193469 NA coding downstream 73420 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 156098 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 364769 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 485884 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 510743 29563196 ~ 29588122 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding upstream 76041 28972732 ~ 28974394 (+)
G106803 NA non-coding upstream 185366 28809335 ~ 28865069 (+)
G106807 NA non-coding upstream 199827 28829299 ~ 28850608 (+)
LOC111193572 NA non-coding upstream 236384 28813405 ~ 28814051 (+)
G106800 NA non-coding upstream 271955 28778182 ~ 28778480 (+)
G106819 NA non-coding downstream 78 29052531 ~ 29058905 (+)
G106821 NA non-coding downstream 11665 29064118 ~ 29073452 (+)
G106855 NA non-coding downstream 26947 29079400 ~ 29093440 (+)
G106856 NA non-coding downstream 59867 29112320 ~ 29113337 (+)
G106857 LOC105899807 non-coding downstream 66043 29118496 ~ 29118746 (+)
LOC103027743 NA other upstream 326409 28703067 ~ 28724026 (+)
G106673 NA other upstream 983452 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1028388 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2878634 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3479614 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 96612 29149065 ~ 29159680 (+)
G107117 NA other downstream 727873 29780326 ~ 29780927 (+)

Expression


Co-expression Network