G106856


Basic Information

Item Value
gene id G106856
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29112320 ~ 29113337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144403
aTAACTGAAAActggactgaggaaactggggaaacacacggaccactaacagacgtaaaaacgtacaaggatcgacaccggggaaatggaagacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacataaccccccccttaacgcgcaactccCGGGGCGCGGAAAACGAACCCCAGGAGCAGGTCAGGAGAGGgcggaaaacaaagaacaagacaagacagaactAGGACGGAGaccggacagggaactggacaggagaccgGACATGAAACGGGGGCAGGACCGGGAATGGACACTGGACGTGGGGCTGGGCAGAGAACggaaactggacaggtgacagagactggacataaGGCTGTACTGGGGACTGGACACTGGACAGGACAGGAGACTGGGGCATGACACTGGACACAGACTGAAACTGGGACTGAACTGGGGATgtaaacggagactggacgaaagactggacagaggacagagacgtagactggacaggggtctGGACATAGGGCTGGACAGGaggctggacacggggctgagactggacagggggctggacaaaactggacaggggaacagGGACCATAACAGTGACGGGGACAGAAACAAATACAGTGACTGGGACGGGAACAGAaaaaccaccggggacaggaactggaactGACACAGATACGGGGAccaagacagggagagacagggggaccaaaaacataggtgggtgcccaggactggcaaaagtctgtggggacagcctgggcacatgactgggggcaaagtcaggaggccttggagcaggcctggaaatacAGGGCCTGGGCCCAAACATAGTTCTGGGAGCTGCAGGTGTTTGAGCTGGAGtcggagcagctggaactgct
>TU144404
taaaaacgtacaaggatcgacaccggggaaatggaagacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacataaccccccccttaacgcgcaactccCGGGGCGCGGAAAACGAACCCCAGGAGCAGGTCAGGAGAGGgcggaaaacaaagaacaagacaagacagaactAGGACGGAGaccggacagggaactggacaggagaccgGACATGAAACGGGGGCAGGACCGGGAATGGACACTGGACGTGGGGCTGGGCAGAGAACggaaactggacaggtgacagagactggacataaGGCTGTACTGGGGACTGGACACTGGACAGGACAGGAGACTGGGGCATGACACTGGACACAGACTGAAACTGGGACTGAACTGGGGATgtaaacggagactggacgaaagactggacagaggacagagacgtagactggacaggggtctGGACATAGGGCTGGACAGGaggctggacacggggctgagactggacagggggctggacaaaactggacaggggaacagGGACCATAACAGTGACGGGGACAGAAACAAATACAGTGACTGGGACGGGAACAGAaaaaccaccggggacaggaactggaactGACACAGATACGGGGAccaagacagggagagacagggggaccaaaaacataggtgggtgcccaggactggcaaaagtctgtggggacagcctgggcacatgactgggggcaaagtcaggaggccttggagcaggcctggaaatacAGGGCCTGGGCCCAAACATAGTTCTGGGAGCTGCAGGTGTTTGAGCTGGAGtcggagcagctggaactgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144403 True 1018 lncRNA 0.56 1 29112320 29113337
TU144404 False 963 lncRNA 0.57 1 29112375 29113337

Neighbor

gene id symbol gene type direction distance location
LOC111193570 NA coding upstream 247095 28841179 ~ 28865225 (+)
LOC111193468 NA coding upstream 296812 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 320329 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 409399 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 415224 28692844 ~ 28697096 (+)
LOC111193469 NA coding downstream 12536 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 95214 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 303885 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 425000 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 449859 29563196 ~ 29588122 (+)
G106855 NA non-coding upstream 18880 29079400 ~ 29093440 (+)
G106821 NA non-coding upstream 38868 29064118 ~ 29073452 (+)
G106817 LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913 non-coding upstream 48642 28953586 ~ 29063678 (+)
G106857 LOC105899807 non-coding downstream 5159 29118496 ~ 29118746 (+)
G106859 NA non-coding downstream 22638 29135975 ~ 29136449 (+)
G106954 NA non-coding downstream 209208 29322545 ~ 29323347 (+)
G106992 NA non-coding downstream 253349 29366686 ~ 29367170 (+)
G106993 NA non-coding downstream 254029 29367366 ~ 29367681 (+)
LOC103027743 NA other upstream 388294 28703067 ~ 28724026 (+)
G106673 NA other upstream 1045337 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1090273 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2940519 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3541499 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 35728 29149065 ~ 29159680 (+)
G107117 NA other downstream 666989 29780326 ~ 29780927 (+)

Expression


Co-expression Network