LOC103043862 (mx1)


Basic Information

Item Value
gene id LOC103043862
gene name mx1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27890718 ~ 27905645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234822.2
ctgtaTGAAACTCAGAGATTCCTGGAAAATGAAAGTAGCGGCGCTGAGGAAGAGTTTCGATTTCTGATGAAGAGAACCTGAGCTCAGCTTCCTCCAAACTCCAGACCACAGACTACAGACTACAGCAGCTGCGCTGAGGCACCTGACGTCCGCGAGGTTGCTACGGTTGCTGAGGTATCTGAGATGGGTTCCACGCTGAATGAGCAGTATGAGGAGAAGGTCAGGCCGTGTATTGATCTGATAGACTCTCTCAGATCTCAGGGGGTGGAGAAGGACCTGGCGCTGCCCGCCATCGCCGTTATAGGAGACCAGAGCTCCGGCAAGAGCTCCGTGCTGGAGGCGCTCAGCGGGGTCGCCCTACCCAGAGGCAGCGGTATCGTGACGCGATGTCCTCTGGAGCTGAAGATGAAGAGGTGCCGGGAGGAGGACAGCTGGCACGGGAAGATCAGCTACGACGGCTACGAAGAGGAGTTAGATGATCCAGCCGAGGTGGAGAGCAAGATCAGAGAAGCCCAGGATAAAATAGCCGGGGTTGGAGTGGGGATCAGTGATGACCTCATCAGTCTGGAGATAACTTCTTCCAACGTTCCTGATCTCACACTTATCGACCTGCCGGGGATCGCACGAGTCGCCGTCAAGGGCCAACCAGAAGACATCGGAGACCAGATTAAGAGGCTGATCCGGAAGTTCATCACCAAGCAGGAAACGATTAACCTGGTGGTGGTGCCGTGCAACGTGGACATCGCCACCACTGAAGCTCTGAAGATGGCTCAGGTGGAGGATCCGAATGGAGAGAGGACTCTAGGCATCCTGACGAAGCCGGACCTGGTGGATAAGGGGACGGAGGAGACGGTGGTGGAGATCGTTAATAACGAGATCATTAATCTGACTAAAGGCTACATGATCGTTCGCTGCAGAGGACAGAAGGAGATAATAGACCGCGTGTCTCTGACTGAAGCCACGGAGAAGGAGAAGGCCTTCTTCAGGGATCATCCTCACTTCAGCGTGCTGTACGACGACGGCAAAGCCACCGTCCCCAAACTCGCTGAGAAACTGACGCTGGAGCTGGTCCATCACATCGAGAAATCGCTGCCGAGGCTTGAGGAGCAGATCGAGGCGAAGCTGGCCGAGACCCAGGACGAGCTGGAAAAGTACGGCAATGGTCCGCCCATGGAGCCCAGCGAGCGCATCTACTATCTGATTGATaAAGTGACGGCGTTCACTCAGGACGCTCTGAACCTGACCATGGGGGAGGAGCTTAGGACTGCCCCCCACCTCAACATCTTCTCCAACCTAAGGATAAAGTTCGAGAGCTGGAAGCAGCACCTGGACCAATCAGGAGAGACCTTTAACAGGCGAATTGAGAAGGAAGTGCAGGAGTATGAGGTTAAGTACCGGGGCCGGGAACTTCCAGGATTCATTAACTACAAGACCTTCGAGGTGATGGTGAAGGACCAGATCAAGAAGCTGGAGGAACCTGCTGTCAGGAAGCTGAAGGAGATCTCAGATCTTATTAGAAAGGGCTTCATCCAGTTGGCTCAGAACAGCTTTGTGGGCTTCCCCAACCTTCTCAGAACAGCAAAGACCAGGATCGACAGTATAAAACAGGAGAAGGAGGCGGAGGCCGAGTCGATGTTGAGGACCCAGTTTAAGATGGAGCTGATCATCTACACTCAGGACAGCACCTACAGCAACACCCTGATTTCTCTGAAgcatgaagaggaggagggtgAAGAACAGAAAGGAGGAAATTCCTACGTAGTCTCTGGTTTTGGTTTTTCCAGTCTGCTCTCCAACACGAACAACCACGCCACCCTGCAGGAACTGATGCGGCACCTCAAGTCCTACTACGGCATTGCTAGTAAGCGCCTGGCGGACCAGGTCCCGCTGATGATCCGGTACCTGCTGCTGCAGGAGGCGGCGCTGCAGCTGCAGAGGGACATGCTGCAGCTGATACAGGACAAGGACTGCACCGAGACCCTGCTCAAAGAGGACCACGACATCGGCAACAAGCGCGCCAACCTGCTGAGCCGCCAGAAACGACTGATGAAAGCCCACAGCTACCTCGTCAAGTTTTAGCGCGTCCAGACTGAAATGACTGGATGAAGATATTCATTAAATTACTAATTtcattttagtctaaataactatatatacaACCGGCAGGTTTTCTTTATGTATCCTTATCTTACTTTTGTTCAGTTGTTCCATTATTTACAGAGGACTAGGTTATAAGGTGTGATCATCAGTGTAGATGTTTTGGGGTGGGTATCTGGTAGCTAAACCAAAGATGAGGTTTTAGATTCAGTTTCTAAagtatatagataaaaaaaatcaagaaattttATCAGTGTATTGAAATGTGCCACAGTTCCAACAGATTTAATGTACTGGGTAAGCATGGACCATTTACACCAATGGATCAATTATTAGGAAGGTTTCAATATGGGTTTAAGATATATGCTACTGTAGCTAGCTGATAGCTAGCAAtcagtctcagaaaattttaatatcataTAAGACTAATTAGTACTTttgcaagtcctgctggaaaatgaaatctgcacctcCATAAAAGCCATTTTTGTGgagatggaagcatgaagtgatgTAAGATTTTcctggaaaacactgcactgactttggacttgataatacaACACAGTAGTGTCCAAGCTGCTTAAGGTCTAGTTTGAAGtctctacaatcagtgatggtttggttggagagtcatgtctgtcatctgctggtgttgatccactgtgttttattatt

Function

symbol description
mx1 Enables identical protein binding activity. Involved in antiviral innate immune response; interleukin-27-mediated signaling pathway; and negative regulation of viral genome replication. Located in cytosol; nuclear membrane; and perinuclear region of cytoplasm. Implicated in alopecia areata; avian influenza; liver disease; and prostate cancer. Biomarker of Human papillomavirus infectious disease.

NR:

description
PREDICTED: interferon-induced GTP-binding protein Mx1

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234822.2 True 2775 mRNA 0.50 13 27890718 27905645

Neighbor

gene id symbol gene type direction distance location
LOC103047315 LOC108440455 coding upstream 82634 27802084 ~ 27808084 (+)
arglu1 NA coding upstream 122451 27759212 ~ 27768267 (+)
LOC111193461 cpo,LOC108258336 coding upstream 132621 27745088 ~ 27758097 (+)
LOC103046391 NA coding upstream 151620 27729513 ~ 27739098 (+)
atic atic,pur9,LOC107556291,LOC107674004,LOC107750210 coding upstream 286487 27588049 ~ 27604231 (+)
LOC111193463 NA coding downstream 88354 27993999 ~ 27999852 (+)
LOC111193464 NA coding downstream 783910 28689555 ~ 28692305 (+)
LOC111193465 NA coding downstream 787199 28692844 ~ 28697096 (+)
LOC111193466 NA coding downstream 796367 28702012 ~ 28702921 (+)
LOC111193571 NA coding downstream 880319 28785964 ~ 28791991 (+)
G106636 NA non-coding upstream 63870 27826587 ~ 27826848 (+)
G106572 NA non-coding upstream 256508 27630943 ~ 27634210 (+)
G106562 NA non-coding upstream 266017 27583377 ~ 27624701 (+)
G106564 NA non-coding upstream 280104 27609381 ~ 27610614 (+)
G106557 NA non-coding upstream 319072 27571336 ~ 27571646 (+)
G106644 NA non-coding downstream 140 27905785 ~ 27906285 (+)
G106646 NA non-coding downstream 1311 27906956 ~ 27907211 (+)
G106648 NA non-coding downstream 6661 27912306 ~ 27914261 (+)
G106642 NA non-coding downstream 9902 27915547 ~ 27918196 (+)
G106650 NA non-coding downstream 20615 27926260 ~ 27936905 (+)
LOC103037236 NA other upstream 1718917 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 2319897 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 2521279 25361744 ~ 25369439 (+)
G106146 NA other upstream 3477620 24411208 ~ 24413098 (+)
G106036 NA other upstream 3901126 23987207 ~ 23989592 (+)
G106661 lancl1 other downstream 108871 28014516 ~ 28022047 (+)
G106673 NA other downstream 160707 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 797422 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 1243420 29149065 ~ 29159680 (+)
G107117 NA other downstream 1874681 29780326 ~ 29780927 (+)

Expression


Co-expression Network