G53396


Basic Information

Item Value
gene id G53396
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5554770 ~ 5554990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60811
GTTAATGTAGAGCGAACTCTGTGAGAGCAGGCAAAGGCGAGCTGCTCTGCTCGGCGTGATTGCAGAATATTATGTTTGTGGCGCTGAGAGTGAGTTTAGCACGTCTGCTTGTGTTAAGCGGTTTGTGCCTGAACGAGAGGCTTTTACGCAAACATTTGCCTTCCGTGCTGTTAACCCTCATGGTCTGTGTGTCATCTGAGAGACCCCACGGCCATTTTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60811 True 221 lncRNA 0.50 1 5554770 5554990

Neighbor

gene id symbol gene type direction distance location
CI01000009_05538212_05539688 NA coding upstream 15082 5538212 ~ 5539727 (+)
CI01000009_05523743_05526184 NA coding upstream 28521 5523642 ~ 5526249 (+)
CI01000009_05522736_05523662 NA coding upstream 31108 5522736 ~ 5523662 (+)
CI01000009_05502414_05506275 NA coding upstream 48495 5499971 ~ 5506275 (+)
CI01000009_05491807_05498189 TFCP2L1 coding upstream 55971 5491807 ~ 5498799 (+)
CI01000009_05685508_05688628 NA coding downstream 130518 5685508 ~ 5688633 (+)
CI01000009_05696405_05703318 NA coding downstream 140681 5695671 ~ 5703921 (+)
CI01000009_05704310_05721474 KLF7, KLF7A, KLF7B coding downstream 149003 5703993 ~ 5722006 (+)
CI01000009_05761849_05767932 CREB1, CREB1A, CREB1B coding downstream 205993 5760983 ~ 5768703 (+)
CI01000009_05772094_05781990 NA coding downstream 215633 5770623 ~ 5782227 (+)
G53388 NA non-coding upstream 14132 5522242 ~ 5540638 (+)
G53383 NA non-coding upstream 145097 5409457 ~ 5409673 (+)
G53382 NA non-coding upstream 146006 5408444 ~ 5408764 (+)
G53338 NA non-coding upstream 152542 5399593 ~ 5402228 (+)
G53352 NA non-coding upstream 186820 5365850 ~ 5367950 (+)
G53402 NA non-coding downstream 18644 5573634 ~ 5573866 (+)
G53584 NA non-coding downstream 27467 5582457 ~ 5582685 (+)
G53632 NA non-coding downstream 187262 5742252 ~ 5742466 (+)
G53637 NA non-coding downstream 191585 5746575 ~ 5746951 (+)
G53676 NA non-coding downstream 225594 5780584 ~ 5781118 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2345786 3202207 ~ 3208984 (+)
G51529 NA other upstream 2492183 3062033 ~ 3062587 (+)
G51274 NA other upstream 3204284 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3653344 1897343 ~ 1919516 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 305312 5931718 ~ 5943899 (+)
G53651 NA other downstream 690574 6245564 ~ 6248392 (+)
G56100 NA other downstream 3574310 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4298369 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 6205796 11761606 ~ 11766944 (+)

Expression


Co-expression Network