G53584


Basic Information

Item Value
gene id G53584
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5582457 ~ 5582685 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU61023
CCTACCTCTATCTTCTTTGACCCGGGGAAGTGTGGCTCAGCTGCCGAGGTGCAGGCGTAAGTTGGGTGGACAGTTGTGGACCCAGCTGCCAAAGGGACATATGTCGAGTAGATTCCGTAGGGTACTGTGATGGCACGCAGGGACTTGGCTCTTGAAATGACCAGCAGGGCATCAAAAATGGCACAATACGAATGCAGAGACACACCAGCATTCCAATCATACTCATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61023 True 229 lncRNA 0.52 1 5582457 5582685

Neighbor

gene id symbol gene type direction distance location
CI01000009_05538212_05539688 NA coding upstream 42769 5538212 ~ 5539727 (+)
CI01000009_05523743_05526184 NA coding upstream 56208 5523642 ~ 5526249 (+)
CI01000009_05522736_05523662 NA coding upstream 58795 5522736 ~ 5523662 (+)
CI01000009_05502414_05506275 NA coding upstream 76182 5499971 ~ 5506275 (+)
CI01000009_05491807_05498189 TFCP2L1 coding upstream 83658 5491807 ~ 5498799 (+)
CI01000009_05685508_05688628 NA coding downstream 102823 5685508 ~ 5688633 (+)
CI01000009_05696405_05703318 NA coding downstream 112986 5695671 ~ 5703921 (+)
CI01000009_05704310_05721474 KLF7, KLF7A, KLF7B coding downstream 121308 5703993 ~ 5722006 (+)
CI01000009_05761849_05767932 CREB1, CREB1A, CREB1B coding downstream 178298 5760983 ~ 5768703 (+)
CI01000009_05772094_05781990 NA coding downstream 187938 5770623 ~ 5782227 (+)
G53402 NA non-coding upstream 8591 5573634 ~ 5573866 (+)
G53396 NA non-coding upstream 27467 5554770 ~ 5554990 (+)
G53388 NA non-coding upstream 41819 5522242 ~ 5540638 (+)
G53383 NA non-coding upstream 172784 5409457 ~ 5409673 (+)
G53382 NA non-coding upstream 173693 5408444 ~ 5408764 (+)
G53632 NA non-coding downstream 159567 5742252 ~ 5742466 (+)
G53637 NA non-coding downstream 163890 5746575 ~ 5746951 (+)
G53676 NA non-coding downstream 197899 5780584 ~ 5781118 (+)
G53646 NA non-coding downstream 261364 5844049 ~ 5845824 (+)
G53675 NA non-coding downstream 276512 5859197 ~ 5895612 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2373473 3202207 ~ 3208984 (+)
G51529 NA other upstream 2519870 3062033 ~ 3062587 (+)
G51274 NA other upstream 3231971 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3681031 1897343 ~ 1919516 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 277617 5931718 ~ 5943899 (+)
G53651 NA other downstream 662879 6245564 ~ 6248392 (+)
G56100 NA other downstream 3546615 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4270674 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 6178101 11761606 ~ 11766944 (+)

Expression


Co-expression Network