LOC111193570


Basic Information

Item Value
gene id LOC111193570
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28841179 ~ 28865225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674950.1
CTATTTCCTCCATTTGTCAGAGAAGTGCTTTAGAAGAAAAATGAAGTCCAGAAGCAGTGCATCCCTCTTCCTCCTCTGCGCTCTGATTATTAACAACTTTACAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAACCTTGGCCTTGATCAAACTGATGAGCTTGTATGGAATCACAACTCTCAGAGAGTGTTTAAAGGACTGGTTATTACAGCTccaacaaaactaaacaacGTGAAGCTGACCACTGATGGTTCCCTTATAATCAATTCTGTAAAAATGAAAGATAATGGCGACCATGAGTTTGAAGTTTTCCTTTCGAATGGCAGATCtaaagcaaaaaaatccatCACTCTTTGTGTTCATGAAAAGCTCATTAAGCCAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGGCAAAACCGGACTGACCTTCAGTTGGTataaaaatgaggaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACCACTAAATACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTTTATGGAGACACAACTCTAAGAGAGTGGTTAAAGGAGTGGTTAGCACATTaccaacaaaactaaacaacGTGAAGCTGACCACTGATGGATCCCTTATAATCCATTCTGTAAAAATGGAAGATAATGGCGACCATGAGTTTGAAGTTTTCCTGTCGAATGGCAGAtctaaagcaaaaaaatcaaTCACACTGTGTGTTTATGAAAAGCTCCTTAAGCCAACAGTGGACATCACATGTATAGATGGGACTCCTTCCATCAGCTGTAAAGTTGAAGACAAAACCGGACTGACCTTCAGTTggtataaaaatgagaaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACAACCGAAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTGTATGGAGACACAACTCTAAGAGAGTGTTTAAAGGAGAGGTTAGCAGATTACCAACAAAACTAAACATCGCGAAGGTGACCAGTGATGGATCCCTTGTAATcagttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGCTTTTCTTTCCTCTGGCAGATCTAAACCAGAATCGAAAAAATCTGTCAAACTGTGTGTTCATgaaaagcCCCCTAAGCCAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGACAAAACCGGACTGACCTTCAGTTGGTataaaaatgaggaaaaaattGATGAAACTTGTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACCACTAAATACTCCAGTGCATGTGACTTTACTGTGGCAGTAGGGAGCACTATTACCATTTACCTTGGTGTTGATGAAACTGATGAGCTTGTATGGAGACACAACTCTCAGAGAGTGTTTAAAGGACTGGTTATTACAGCaccaacaaaactaaaaaatgtgAAGCTGACCACTGATGGGTCCCTTATAATCAATTCTGTAAAAATGGAAGATAATGGCGACCATGAGTTTGAAGCTTTTCTTTCGAATGGCAAATCtaaagcaaaaaaatccatCACACTGTGTGTTTATGAAAAGCTCATTAAGCCAACAGTGGACATCACATGTATAAATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGACAAAACCGGACTGACCTTCAATTggtataaaaatgagaaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACAACCGAAGatgAAGAAGAGCTCATGCTAAACAGCTCTCCACACTCTCCTACACCTCTCCAGACTCAGCAAACATAGAAGATTAATGCAGGATTTCATCCAGCTCCTCCCCAACACCCTAAAATCTCCAATTATGAAATACTTTTGAACACATCTGTACATGCAGCtaaaacagggagcctagtgcatctcacatttatcaacattaacatttataggactcctaagcttttgttcttaatgacaTTGCTTTTACTTCTATACTTTTTAAaccacttttacacttttacttgagttaaaagcttaagaaatattttaaactctagtatctttACTTCTACTGgaataacacattttttgttttgatgcTGCATACTATATAATGCATTCTAAAGTttgaattcttctttttttaatcagtccTGTGATTTAGTGGTAAATGAGAAATTGTACAAACACTTGTGATGTTATTTCtacaatatgattttttttttactatgcaatgttttttcctgtttaagaaaataaagg
>XM_022674951.1
ACTATTTCCTCCATTTGTCAGAGAAGTGCTTTAGAAGAAAAATGAAGTCCAGAAGCAGTGCATCCCTCTTCCTCCTCTGCGCTCTGATTATTAACAACTTTACAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAACCTTGGCCTTGATCAAACTGATGAGCTTGTATGGAATCACAACTCTCAGAGAGTGTTTAAAGGACTGGTTATTACAGCTccaacaaaactaaacaacGTGAAGCTGACCACTGATGGTTCCCTTATAATCAATTCTGTAAAAATGAAAGATAATGGCGACCATGAGTTTGAAGTTTTCCTTTCGAATGGCAGATCtaaagcaaaaaaatccatCACTCTTTGTGTTCATGAAAAGCTCATTAAGCCAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGGCAAAACCGGACTGACCTTCAGTTGGTataaaaatgaggaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACCACTAAATACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTTTATGGAGACACAACTCTAAGAGAGTGGTTAAAGGAGTGGTTAGCACATTaccaacaaaactaaacaacGTGAAGCTGACCACTGATGGATCCCTTATAATCCATTCTGTAAAAATGGAAGATAATGGCGACCATGAGTTTGAAGTTTTCCTGTCGAATGGCAGAtctaaagcaaaaaaatcaaTCACACTGTGTGTTTATGAAAAGCTCCTTAAGCCAACAGTGGACATCACATGTATAGATGGGACTCCTTCCATCAGCTGTAAAGTTGAAGACAAAACCGGACTGACCTTCAGTTggtataaaaatgagaaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACAACCGAAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTGTATGGAGACACAACTCTAAGAGAGTGTTTAAAGGAGAGGTTAGCAGATTACCAACAAAACTAAACATCGCGAAGGTGACCAGTGATGGATCCCTTGTAATcagttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGCTTTTCTTTCCTCTGGCAGATCTAAACCAGAATCGAAAAAATCTGTCAAACTGTGTGTTCATgaaaagcCCCCTAAGCCAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGACAAAACCGGACTGACCTTCAGTTGGTataaaaatgaggaaaaaattGATGAAACTTGTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACCACTAAATatgAAGAAGAGCTCATGCTAAACAGCTCTCCACACTCTCCTACACCTCTCCAGACTCAGCAAACATAGAAGATTAATGCAGGATTTCATCCAGCTCCTCCCCAACACCCTAAAATCTCCAATTATGAAATACTTTTGAACACATCTGTACATGCAGCtaaaacagggagcctagtgcatctcacatttatcaacattaacatttataggactcctaagcttttgttcttaatgacaTTGCTTTTACTTCTATACTTTTTAAaccacttttacacttttacttgagttaaaagcttaagaaatattttaaactctagtatctttACTTCTACTGgaataacacattttttgttttgatgcTGCATACTATATAATGCATTCTAAAGTttgaattcttctttttttaatcagtccTGTGATTTAGTGGTAAATGAGAAATTGTACAAACACTTGTGATGTTATTTCtacaatatgattttttttttactatgcaatgttttttcctgtttaagaaaataaaggttta

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006955 immune response biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674950.1 True 2695 mRNA 0.38 10 28841180 28865221
XM_022674951.1 False 2184 mRNA 0.38 8 28841179 28865225

Neighbor

gene id symbol gene type direction distance location
LOC111193468 NA coding upstream 25671 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 49188 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 138258 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 144083 28692844 ~ 28697096 (+)
LOC111193464 NA coding upstream 148874 28689555 ~ 28692305 (+)
LOC111193469 NA coding downstream 260648 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 343326 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 551997 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 673112 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 697971 29563196 ~ 29588122 (+)
LOC111193572 NA non-coding upstream 27128 28813405 ~ 28814051 (+)
G106800 NA non-coding upstream 62699 28778182 ~ 28778480 (+)
G106799 NA non-coding upstream 64142 28776546 ~ 28777037 (+)
G106795 NA non-coding upstream 106208 28734295 ~ 28734971 (+)
G106792 NA non-coding upstream 113459 28727286 ~ 28727720 (+)
G106817 LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913 non-coding downstream 88361 28953586 ~ 29063678 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding downstream 107507 28972732 ~ 28974394 (+)
G106822 NA non-coding downstream 185210 29050435 ~ 29052453 (+)
G106819 NA non-coding downstream 187306 29052531 ~ 29058905 (+)
G106821 NA non-coding downstream 198893 29064118 ~ 29073452 (+)
LOC103027743 NA other upstream 117153 28703067 ~ 28724026 (+)
G106673 NA other upstream 774196 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 819132 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2669378 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3270358 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 283840 29149065 ~ 29159680 (+)
G107117 NA other downstream 915101 29780326 ~ 29780927 (+)

Expression


Co-expression Network