G56093


Basic Information

Item Value
gene id G56093
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9089659 ~ 9090157 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU63839
ATCAGAACAAAAAAAAAACAAATTCAAAAACTCTTAATTTCCACTATTGTTTAACTTAGAGGAAGTGTTACTAACAACGAATTACAACGAAATGGTTGTACATAACATAAAACGAATTACAACGAAATGGTTGTACATAACATATAACTGTCAGCTGAAATCCAGTCATACTGGTCAGGGAACTATTTACGAAACTTTAACCGCTGCTTAAAACAACACAAACTCAAAAACACGTGGGGGTAGAGGCCTGTGTGAGAAGCTCAGAAGTCATATCCACTATAGATCTCAATGGAAGGCCACTGAGGAAGCCCTGATGCTTGGCCCGCAGATCCAGCAGGGCATCCACGATCCTTTGGCGGCCTACGCTTGGGTGGCGCTCCAACAGCCGGGCCATGATTGTGTCAAAGCTTCCCATGGTGGCGTAGTGCTGTGGCACACATGTACCAGAGGCTGTGGGCGAGTCGCACACGTTGGTTAACCTGTCCAAACTACAGCGCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU63839 True 499 lncRNA 0.45 1 9089659 9090157

Neighbor

gene id symbol gene type direction distance location
CI01000009_08955749_09012630 NEB coding upstream 76576 8954503 ~ 9013083 (+)
CI01000009_08940709_08944557 ARL5A.S, ARL5A, ARL5B coding upstream 145102 8940443 ~ 8944557 (+)
CI01000009_08899091_08928547 NA coding upstream 160808 8897170 ~ 8928851 (+)
CI01000009_08863308_08868625 RND3B, RND3 coding upstream 220535 8863308 ~ 8869124 (+)
CI01000009_08822338_08830986 LYPD6 coding upstream 257209 8822338 ~ 8832450 (+)
CI01000009_09212210_09214607 NA coding downstream 121774 9211931 ~ 9215286 (+)
CI01000009_09274252_09275727 CRYGM3 coding downstream 184095 9274252 ~ 9275764 (+)
CI01000009_09277694_09278311 CRYGM5 coding downstream 187537 9277694 ~ 9278510 (+)
CI01000009_09283776_09284378 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 193259 9283416 ~ 9284393 (+)
CI01000009_09288599_09289209 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2D13, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 198442 9288599 ~ 9289224 (+)
G56073 NA non-coding upstream 55015 9033839 ~ 9034644 (+)
G56071 NA non-coding upstream 56256 9033092 ~ 9033403 (+)
G56070 NA non-coding upstream 56866 9032201 ~ 9032793 (+)
G56001 NA non-coding upstream 140082 8947502 ~ 8949577 (+)
G56057 NA non-coding upstream 193271 8895953 ~ 8896388 (+)
G56113 NA non-coding downstream 53983 9144140 ~ 9170427 (+)
G56168 NA non-coding downstream 139016 9229173 ~ 9229646 (+)
G56169 NA non-coding downstream 141174 9231331 ~ 9231772 (+)
G56170 NA non-coding downstream 142424 9232581 ~ 9232881 (+)
G56171 NA non-coding downstream 144386 9234543 ~ 9234776 (+)
G53651 NA other upstream 2841267 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 3156858 5931718 ~ 5943899 (+)
G53388 NA other upstream 3550605 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 5880675 3202207 ~ 3208984 (+)
G51529 NA other upstream 6027072 3062033 ~ 3062587 (+)
G56100 NA other downstream 39143 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 763202 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 2670629 11761606 ~ 11766944 (+)
G57811 NA other downstream 2843785 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 3342401 12432538 ~ 12436017 (+)

Expression


Co-expression Network