G56383


Basic Information

Item Value
gene id G56383
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9873232 ~ 9876664 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64201
TATTTAGGTAATAAATTGCTATAGCTTAGTTTAAAATTTGTTTTAAGTTTTGTTTTAATTAAAGACCGTAACCCGGAAGCTAAGGGACACTTCCGCGTTCACGGGGTTGTGCTTTTATTTGATAGCAGCAGGTTGTGTAAGAAAGGACGCACGTGAACACATCAGTCTCTGCATTAAATAAAACAAGTGGAAATGTCGAGCCTGTCAGCAGCCAGTGTGGAGGCTTCACCAGCAATAGAGGGGGCAGAGCAGAAGAAACCTCTGAAACCATGCTGTGCGTGTCCTGAGACCAAGAAAGCACGAGATGCATGCATAATTGAAAAGGGCGAAGAAAGCTGCACAGACCTCATCGAAGCGCACAAAGAGTGCATGAGGGCGCTTGGTTTTAAGATATGATACCACCATCATCTTCATATTGAGTGAATGTGTGTGACAGCCTGTGTGAAATGGGACCTGGTGTGCACTTTTATTTATATTTTTACACTGGAGGAAAGATTATGCAGGGAAAATTTGTTCCTCTGAGGGAAATGTTGTCTGTCTTCTCTTTCTCTTTTTTTCATATGTGCTTTACGTATGTTTATGGTCAATAAAGATCCTATGCAAGATGTTAATCCATTCTCTGTTCCTG
>TU64202
TATTTAGGTAATAAATTGCTATAGCTTAGTTTAAAATTTGTTTTAAGTTTTGTTTTAATTAAAGACCGTAACCCGGAAGCTAAGGGACACTTCCGCGTTCACGGGGTTGTGCTTTTATTTGATAGCAGCAGGTTGTGTAAGAAAGGACGCACGTGAACACATCAGTCTCTGCATTAAATAAAACAAGTGGAAATGTCGAGCCTGTCAGCAGCCAGTGTGGAGGCTTCACCAGCAATAGAGGGGGCAGAGCAGAAGAAACCTCTGAAACCATGCTGTGCGTGTCCTGAGACCAAGAAAGCACGAGATGCATGCATAATTGAAAAGGGCGAAGAAAGCTGCACAGACCTCATCGAAGCGCACAAAGAGTGCATGAGGGCGCTTGGTTTTAAGATATGATACCACCATCATCTTCATATTGAGTGAATGTGTGTGACAGCCTGTGTGAAATGGGACCTGGTGTGCACTTTTATTTATATTTTTACACTGGAGGAAAGATTATGCAGGGAAAATTTGTTCCTCTGAGGGAAATGTTGTCTGTCTTCTCTTTCTCTTTTTTTCATATGTGCTTTACGTATGTTTATGGTCAATAAAGATCCTATGCAAGATGTTAATCCATTCTCTGTTCCTGTATCTTTACCTTTTATTTGTATGCAATATATCACTCTTAAAACAGTGCTGACTTTTTTTTTTTTTTTTTTTTAAGCCTATTTTAAGTGATTCAGTCTAATCAATATGTATCACATGCTTGGTTTGCTAATTTTATCACATAAATTATTGATGATGAAGTATTGTCTTTTGCTCAACACCATGCAGGCCAGGCAGTTTTACGCAAACAGACTATTCCTTCGAGCCTCCTACTCGGTTGGCCTTTGAATTCCCTGTACCAGCGTTTGGCTGGTGACAGCTGCACTTAACTATGCATGCAGGCCTAAAATAGAGCTGCTGCTCCCAGCACACTCTAATCTGAGGTCTACACGCAGAAGTGCTTTTATTCTGCATGTACACCTGGTGTGAACCTAGCAAATGCAATTCATAATTTGCATTTTCTCCTAAAGATTTTGCAAAGTTCATGAGCATAGTTAGTCACTGACACAAACACAGCTTGCTTATTTAGCATATTGCACTATTCTTTCTGCTTATAATTATATAAATATAGGTAATTTTGATTAATCGATTTATTAAATCTTAGCTTAGGCACAGCATGTGCAAATGTATAATTGATATTTTTCAGATGTTAAGTGTGTAAATTGGTTTGTTCTGGTTTATTTCATTCATTCAAATTGCTTTCGATGGTGCTTGACTACAATGAGACCGTGTACATAGTATGAGTGAGAGAATGTATCTGCATGCCTCTTGCAGGGTACATGTCAAATTGACAGCTCTGAATAGTAGCTTTGACACTCTGTGATCAACTATATCAGCTAGTTAAGCTGCACGAGACAACCAATGTATATTGACTTTCATTGTGTTTTTTAGTTATGTTTGTATATATTTATAAATATTTTATAGTTTTATATAATAATTTTCCATGGCAGAAACATATGGAAGCTTGTTTTTGTAATTGCAATTTTTTTCTTCTCACAATTTGGA
>TU64200
AGGGACACTTCCGCGTTCACGGGGTTGTGCTTTTATTTGATAGCAGCAGGTTGTGTAAGAAAGGACGCACGTGAACACATCAGTCTCTGCATTAAATAAAACAAGTGGAAATGTCGAGCCTGTCAGCAGCCAGTGTGGAGGCTTCACCAGCAATAGAGGGGGCAGAGCAGAAGAAACCTCTGAAACCATGCTGTGCGTGTCCTGAGACCAAGAAAGCACGAGATGCATGCATAATTGAAAAGGGCGAAGAAAGCTGCACAGACCTCATCGAAGCGCACAAAGAGTGCATGAGGGCGCTTGGTTTTAAGATATGATACCACCATCATCTTCATATTGAGTGAATGTGTGTGACAGCCTGTGTGAAATGGGACCTGGTGTGCACTTTTATTTATATTTTTACACTGGAGGAAAGATTATGCAGGGAAAATTTGTTCCTCTGAGGGAAATGTTGTCTGTCTTCTCTTTCTCTTTTTTTCATATGTGCTTTACGTATGTTTATGGTCAATAAAGATCCTATGCAAGATGTTAATCCATTCTCTGTTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64201 False 628 lncRNA 0.41 4 9873232 9875702
TU64202 False 1590 lncRNA 0.37 4 9873232 9876664
TU64200 True 546 lncRNA 0.44 4 9873314 9875702

Neighbor

gene id symbol gene type direction distance location
CI01000009_09866000_09866290 NA coding upstream 6838 9865723 ~ 9867040 (+)
CI01000009_09853929_09854476 SAP18 coding upstream 18730 9853929 ~ 9856587 (+)
CI01000009_09783235_09785477 IL17D coding upstream 87669 9783235 ~ 9785563 (+)
CI01000009_09770695_09782443 IFT88 coding upstream 90696 9770695 ~ 9782536 (+)
CI01000009_09716074_09733349 ZMYM2 coding upstream 138854 9714372 ~ 9734378 (+)
CI01000009_09878612_09881564 POPDC2 coding downstream 1948 9878612 ~ 9881894 (+)
CI01000009_09952526_09962840 WARS2 coding downstream 75862 9952526 ~ 9964279 (+)
CI01000009_09967529_09989449 TBX15 coding downstream 90720 9967384 ~ 9989467 (+)
CI01000009_10103558_10119209 GDAP2 coding downstream 226894 10103558 ~ 10119220 (+)
CI01000009_10268535_10269640 NA coding downstream 391871 10268535 ~ 10269784 (+)
G56320 NA non-coding upstream 204053 9668742 ~ 9669179 (+)
G56306 NA non-coding upstream 218506 9647928 ~ 9654726 (+)
G56243 NA non-coding upstream 384688 9488185 ~ 9488544 (+)
G56242 NA non-coding upstream 386424 9486599 ~ 9486808 (+)
G56411 NA non-coding downstream 16169 9892833 ~ 9897455 (+)
G56412 NA non-coding downstream 21063 9897727 ~ 9898245 (+)
G56384 NA non-coding downstream 23023 9899687 ~ 9906776 (+)
G56386 NA non-coding downstream 32029 9908693 ~ 9914394 (+)
G56417 NA non-coding downstream 40205 9916869 ~ 9917173 (+)
G56100 NA other upstream 742946 9129300 ~ 9130286 (+)
G53651 NA other upstream 3624840 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 3940431 5931718 ~ 5943899 (+)
G53388 NA other upstream 4334178 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1884122 11761606 ~ 11766944 (+)
G57811 NA other downstream 2057278 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2555894 12432538 ~ 12436017 (+)
G57682 NA other downstream 2948805 12825469 ~ 12892339 (+)
G57691 NA other downstream 3029780 12906444 ~ 12918465 (+)

Expression


Co-expression Network