G56439


Basic Information

Item Value
gene id G56439
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10020106 ~ 10020343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64275
GTTTATTCACTATAGTTTAAAAAAATTGTAATAAAATATGACAAGATCTCAGAGTTAAACTGTGTCAGAAAAAAATAATCTTAATTATGTCCGATAACACTTAAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATTTTTGGTTCCAAATTTTTTATCAATTTTACTGGTAGTCCACTGTATGAAGAATTTTTGGGTATAATATGTCACAGTTTACTTTATTCTGCTATCCTCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64275 True 238 lncRNA 0.28 1 10020106 10020343

Neighbor

gene id symbol gene type direction distance location
CI01000009_09967529_09989449 TBX15 coding upstream 30639 9967384 ~ 9989467 (+)
CI01000009_09952526_09962840 WARS2 coding upstream 55827 9952526 ~ 9964279 (+)
CI01000009_09878612_09881564 POPDC2 coding upstream 138212 9878612 ~ 9881894 (+)
CI01000009_09866000_09866290 NA coding upstream 153712 9865723 ~ 9867040 (+)
CI01000009_09853929_09854476 SAP18 coding upstream 165604 9853929 ~ 9856587 (+)
CI01000009_10103558_10119209 GDAP2 coding downstream 83215 10103558 ~ 10119220 (+)
CI01000009_10268535_10269640 NA coding downstream 248192 10268535 ~ 10269784 (+)
CI01000009_10319216_10329706 PLCD4B coding downstream 298873 10319216 ~ 10329836 (+)
CI01000009_10338738_10339712 BCS1L coding downstream 318395 10338738 ~ 10339774 (+)
CI01000009_10341830_10347798 CYP27A1.2, CYP27A1.4, CYP27A7 coding downstream 321487 10341830 ~ 10348005 (+)
G56417 NA non-coding upstream 102933 9916869 ~ 9917173 (+)
G56386 NA non-coding upstream 105712 9908693 ~ 9914394 (+)
G56384 NA non-coding upstream 113330 9899687 ~ 9906776 (+)
G56412 NA non-coding upstream 121861 9897727 ~ 9898245 (+)
G56411 NA non-coding upstream 122651 9892833 ~ 9897455 (+)
G56349 NA non-coding downstream 31707 10052050 ~ 10135429 (+)
G56456 NA non-coding downstream 37931 10058274 ~ 10058532 (+)
G56392 NA non-coding downstream 238185 10258528 ~ 10259660 (+)
G56507 NA non-coding downstream 262730 10283073 ~ 10284524 (+)
G56509 NA non-coding downstream 268507 10288850 ~ 10289512 (+)
G56100 NA other upstream 889820 9129300 ~ 9130286 (+)
G53651 NA other upstream 3771714 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4087305 5931718 ~ 5943899 (+)
G53388 NA other upstream 4481052 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1740443 11761606 ~ 11766944 (+)
G57811 NA other downstream 1913599 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2412215 12432538 ~ 12436017 (+)
G57682 NA other downstream 2805126 12825469 ~ 12892339 (+)
G57691 NA other downstream 2886101 12906444 ~ 12918465 (+)

Expression


Co-expression Network