G56507


Basic Information

Item Value
gene id G56507
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10283073 ~ 10284524 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64353
TGGGACTCTTTCAGCCGGAAGAGAGACTCGAGCAACTCTCCCACTGCCAGCTTCTTCACCCGGATCAGCTGCAGCACCAGCAGAGTCGCCACCAGTCTCAGAATGTCCGCGTGAGCCTTCACACCAAAGGAACGGATGCCTTTCTCCTTAAGAAAGACATTGGCAAAAAAGTCTACGTCCAGGTTGAGGAAGCTGCTCAGCCTCTCAGTGCACTCCCAGTATCCATCCTACATCCAAACACAACGCATAAATTCATATTCCCTTGACTTACACATTTACATACTGTATATAATCTAGTGCCTTAAATCATGTGTAAAAACCTCATGTTGAAACTCAAACAGCTCATTCCAGGCCACTGTGCCGGGCTTGCTTATTTGTTTTCCCAGCAAGGATTTCTTCCATTTTTTAAAAGGAAAGCCCGTAGTGTCTTTGGTTTCAGGTGCAGAAAACGCAAAGGGTTTTTGTTGTTGCTGAGATGCTCCAAAGCTAAAGGCTGAGTAACCAGAATACCCTAGAGGCTCAGTTGTGTTTTGCGGGACGACAGGAAGGCTACCAGATCCAAAGGCAAGCTTACAAGTTTTAGGTTGACCAAAGGAAACAGAGGCAGCATGAAGAGGGGGAGCCAGCAAGTTTTCCATGTAACTCGTGGAAATAGGTGCAGATATCTCGGCAGCAAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGAATTATGCAGAGAAGCTCTGACATAAGGAGAGGAGGACCACAAAAGGCTTGCTCTCGAAGAGAAAACACTGGGGTGTCGAGACTGGTAGGAAGAGAAAGCCTCTCACTCACGGAGCAAGGTAAGGGCATCATGGCACCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGGTGAGTAATGGACAGAGATTCCATTGACACATAAATAGAGGAGTCTTGAAGGAGAGCACGCACTGGGGCACCAGTCATGATGCCAGGGGAAGGGGGAAGCTGTGGAGCACTTAATTGCATGTTACTAACAGGCATAAAATCTAGGTTTTCAATAATTTCTTCCAATGCTAAGTCTTCATGAAATTCAGTGCTACTCATAGAAATAGGAGTGAAGCATGTCTTTAAATAAGGAGAGCTGGACATGATCTCATGGACAGTGGCAGCTGCTTCTAGATCATCATACTCTTCTTCATAGCAACTCCCCACAGGACGTGTAATACAATCAAAATCCAGGAGATTATATGTGGACATGTCACTGGACCATTCCGCTGATTTCA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU64353 True 1267 lncRNA 0.47 3 10283073 10284524

Neighbor

gene id symbol gene type direction distance location
CI01000009_10268535_10269640 NA coding upstream 13289 10268535 ~ 10269784 (+)
CI01000009_10103558_10119209 GDAP2 coding upstream 163853 10103558 ~ 10119220 (+)
CI01000009_09967529_09989449 TBX15 coding upstream 293606 9967384 ~ 9989467 (+)
CI01000009_09952526_09962840 WARS2 coding upstream 318794 9952526 ~ 9964279 (+)
CI01000009_09878612_09881564 POPDC2 coding upstream 401179 9878612 ~ 9881894 (+)
CI01000009_10319216_10329706 PLCD4B coding downstream 34692 10319216 ~ 10329836 (+)
CI01000009_10338738_10339712 BCS1L coding downstream 54214 10338738 ~ 10339774 (+)
CI01000009_10341830_10347798 CYP27A1.2, CYP27A1.4, CYP27A7 coding downstream 57306 10341830 ~ 10348005 (+)
CI01000009_10361969_10374788 MCM3AP coding downstream 77445 10361969 ~ 10375458 (+)
CI01000009_10376105_10382009 LSS coding downstream 91581 10376105 ~ 10382284 (+)
G56392 NA non-coding upstream 23413 10258528 ~ 10259660 (+)
G56349 NA non-coding upstream 147644 10052050 ~ 10135429 (+)
G56456 NA non-coding upstream 224541 10058274 ~ 10058532 (+)
G56439 NA non-coding upstream 262730 10020106 ~ 10020343 (+)
G56417 NA non-coding upstream 365900 9916869 ~ 9917173 (+)
G56509 NA non-coding downstream 4326 10288850 ~ 10289512 (+)
G56540 NA non-coding downstream 5935 10290459 ~ 10292559 (+)
G56393 NA non-coding downstream 18958 10303482 ~ 10304485 (+)
G56564 NA non-coding downstream 68405 10352929 ~ 10353684 (+)
G56579 NA non-coding downstream 227889 10512413 ~ 10512640 (+)
CI01000009_09853929_09854476 SAP18 other upstream 426486 9853929 ~ 9856587 (+)
G56100 NA other upstream 1152787 9129300 ~ 9130286 (+)
G53651 NA other upstream 4034681 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4350272 5931718 ~ 5943899 (+)
G53388 NA other upstream 4744019 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1476262 11761606 ~ 11766944 (+)
G57811 NA other downstream 1649418 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2148034 12432538 ~ 12436017 (+)
G57682 NA other downstream 2540945 12825469 ~ 12892339 (+)
G57691 NA other downstream 2621920 12906444 ~ 12918465 (+)

Expression


Co-expression Network