G57626


Basic Information

Item Value
gene id G57626
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11512902 ~ 11513204 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65644
CGACATCTTGGAAGTGACGTCAAATGACGCGAGGTCGGGGTTGAGGTCGACACGTCTCCAGCCTTCGCCCCGAGTTCACACACCGGTTTTAAAACAATCTAAATTAAATCTAATAAATTTAGAACAGAATAAGAGAAATATATGCCAAGACTTGGTTTTATCAACCAGGGGAAAAAAGCCGTTACATACTCTACCATTCAAAAGTTTTTCGTCAATTTTTTTTTTTTTTTTTTTTTAAGAAATACTTTTATTCAGCCAGCATGCATTAAATTGATCAAAAGTGACATTAAAGACATTTATAAT

Function

NR:

description
PREDICTED: cholesterol 7-alpha-monooxygenase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65644 True 303 lncRNA 0.35 1 11512902 11513204

Neighbor

gene id symbol gene type direction distance location
CI01000009_11434018_11455253 NA coding upstream 57267 11433792 ~ 11455635 (+)
CI01000009_11342784_11347580 NA coding upstream 164075 11342784 ~ 11348827 (+)
CI01000009_10644080_10691030 CPS1 coding upstream 820852 10644080 ~ 10692050 (+)
CI01000009_10583435_10617169 MAP2 coding upstream 895733 10583435 ~ 10617169 (+)
CI01000009_10555555_10560050 NA coding upstream 952504 10554350 ~ 10560398 (+)
CI01000009_11669960_11702667 HIBCH coding downstream 156756 11669960 ~ 11703539 (+)
CI01000009_11711277_11714191 MSTN, GDF-8, MSTNB coding downstream 197956 11711160 ~ 11714694 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 coding downstream 248402 11761606 ~ 11766944 (+)
CI01000009_11769442_11773619 OSGEPL1 coding downstream 256238 11769442 ~ 11773619 (+)
CI01000009_11789703_11791511 NA coding downstream 276499 11789703 ~ 11791736 (+)
G57618 NA non-coding upstream 45378 11467265 ~ 11467524 (+)
G57616 NA non-coding upstream 48044 11464649 ~ 11464858 (+)
G57615 NA non-coding upstream 48682 11463925 ~ 11464220 (+)
G57589 NA non-coding upstream 81265 11431344 ~ 11431637 (+)
G57567 NA non-coding upstream 115563 11397003 ~ 11397339 (+)
G57606 NA non-coding downstream 17593 11530797 ~ 11532780 (+)
G57654 NA non-coding downstream 107256 11620460 ~ 11655364 (+)
G57665 NA non-coding downstream 150818 11664022 ~ 11666325 (+)
G57772 NA non-coding downstream 233173 11746377 ~ 11757663 (+)
G57786 NA non-coding downstream 264635 11777839 ~ 11778105 (+)
CI01000009_09853929_09854476 SAP18 other upstream 1656315 9853929 ~ 9856587 (+)
G56100 NA other upstream 2382616 9129300 ~ 9130286 (+)
G53651 NA other upstream 5264510 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 5580101 5931718 ~ 5943899 (+)
G53388 NA other upstream 5973848 5522242 ~ 5540638 (+)
G57811 NA other downstream 420738 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 919354 12432538 ~ 12436017 (+)
G57682 NA other downstream 1312265 12825469 ~ 12892339 (+)
G57691 NA other downstream 1393240 12906444 ~ 12918465 (+)

Expression


Co-expression Network