G57811


Basic Information

Item Value
gene id G57811
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11933942 ~ 11935251 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65844
CGGGCAATGAAGGACACAATAGACGGACCCTTCGCGGCCTACTCTATCCCAGTATTCACGATAGGACAGATATTTTCAAAGAAAATGGCGGGTAATTCTGTGGCGGTCGGCAGATACACTTATAAATGGAGAAAGGATCAGACAGCTCAATTTATTCACATGCGAGCCGAAAATGATCACTTATTTACCGGGGCTAAAAACTCGGCCAGCGTGGCTTGGAGGATAATTCTGGAGAAAATGGGCCTGCTGGGGATGGTCACTCCCTATCAGGCCAAAAAAAAATGGGACAACTTGAAAAAAAAATACAAAGATTGCAAGTGTCCTGGGACAGGTGAAGGAGTGAGTGGGAAACCCACTGCTGCAACTTGGCCCTGGTTTGTCCTCATGGACGAGGTGTTGGGACAGAGGCATTCCAACAACTCCCCTGTCCTAATTTCCTCCATCCCTGAGGACACACCAGGGCCAAGTTCAGCAGTGGATGACAAAGATGAAGAGGAGCCAGCAACATCCAAGAGAAAAAGAGACAGAGAGGATGAACTGATTGAGCTAATTAGGGAGGAAATAACGTTTCAGCAAGAGACAGAGGAGAGGAGCGCACAGGAGCACAGGGAGAGAATGGAGCCAGCAGCAGCACCAGACAATAGAAAAAGAGACAGAGTGGATGAGCTGATCGACCTAATTAGGGAGGAAATAAAGTTTCAGCGAGAGACTGAGGAGAGGAGAGCACGAGAGAGCAGGGAGAGAATGGACA
>TU65845
CGGGCAATGAAGGACACAATAGACGGACCCTTCGCGGCCTACTCTATCCCAGTATTCACGATAGGACAGATATTTTCAAAGAAAATGGCGGGTAATTCTGTGGCGGTCGGCAGATACACTTATAAATGGAGAAAGGATCAGACAGCTCAATTTATTCACATGCGAGCCGAAAATGATCACTTATTTACCGGGGCTAAAAACTCGGCCAGCGTGGCTTGGAGGTAAGGCAACGACCCATTTGTAATATTTTCACTACGCTCTCTTGTGTATTATAACAAAAAGCCCTCACCCTATGCAAAGCCAACAACGAGCAGTAGAAAAGGTAATAGCCTTTCACTTTGTTGTGTTTTTGTAGTGCTGTCATGCAATGTATGTTCTACAAATGCTTTAACTAAACTTGAGGATCCAGAAATATGATTTCTGGAGTATTTTTTATGCATGTCCTGCTGTGTCATATTTTGTAATGTTAAGATTGCACCCCTGTCTTAATACTTTTTGTAAGTGTTTCCTTTTTCTCTTGTTTTAGGATAATTCTGGAGAAAATGGGCCTGCTGGGGATGGTCACTCCCTATCAGGCCAAAAAAAAATGGGACAACTTGAAAAAAAAATACAAAGATTGCAAGTGTCCTGGGACAGGTGAAGGAGTGAGTGGGAAACCCACTGCTGCAACTTGGCCCTGGTTTGTCCTCATGGACGAGGTGTTGGGACAGAGGCATTCCAACAACTCCCCTGTCCTAATTTCCTCCATCCCTGAGGACACACCAGGGCCAAGTTCAGCAGTGGATGACAAAGATGAAGAGGAGCCAGCAACATCCAAGAGAAAAAGAGACAGAGAGGATGAACTGATTGAGCTAATTAGGGAGGAAATAACGTTTCAGCAAGAGACAGAGGAGAGGAGCGCACAGGAGCACAGGGAGAGAATGGAGCCAGCAGCAGCACCAGACAATAGAAAAAGAGACAGAGTGGATGAGCTGATCGACCTAATTAGGGAGGAAATAAAGTTTCAGCGAGAGACTGAGGAGAGGAGAGCACGAGAGAGCAGGGAGAGAATGGACA
>TU65846
CGGGCAATGAAGGACACAATAGACGGACCCTTCGCGGCCTACTCTATCCCAGTATTCACGATAGGACAGATATTTTCAAAGAAAATGGCGGGTAATTCTGTGGCGGTCGGCAGATACACTTATAAATGGAGAAAGGATCAGACAGCTCAATTTATTCACATGCGAGCCGAAAATGATCACTTATTTACCGGGGCTAAAAACTCGGCCAGCGTGGCTTGGAGGTAAGGCAACGACCCATTTGTAATATTTTCACTACGCTCTCTTGTGTATTATAACAAAAAGCCCTCACCCTATGCAAAGCCAACAACGAGCAGTAGAAAAGGATAATTCTGGAGAAAATGGGCCTGCTGGGGATGGTCACTCCCTATCAGGCCAAAAAAAAATGGGACAACTTGAAAAAAAAATACAAAGATTGCAAGTGTCCTGGGACAGGTGAAGGAGTGAGTGGGAAACCCACTGCTGCAACTTGGCCCTGGTTTGTCCTCATGGACGAGGTGTTGGGACAGAGGCATTCCAACAACTCCCCTGTCCTAATTTCCTCCATCCCTGAGGACACACCAGGGCCAAGTTCAGCAGTGGATGACAAAGATGAAGAGGAGCCAGCAACATCCAAGAGAAAAAGAGACAGAGAGGATGAACTGATTGAGCTAATTAGGGAGGAAATAACGTTTCAGCAAGAGACAGAGGAGAGGAGCGCACAGGAGCACAGGGAGAGAATGGAGCCAGCAGCAGCACCAGACAATAGAAAAAGAGACAGAGTGGATGAGCTGATCGACCTAATTAGGGAGGAAATAAAGTTTCAGCGAGAGACTGAGGAGAGGAGAGCACGAGAGAGCAGGGAGAGAATGGACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU65844 False 751 TUCP 0.48 4 11933942 11935251
TU65845 False 1056 TUCP 0.45 3 11933942 11935251
TU65846 True 852 TUCP 0.48 4 11933942 11935251

Neighbor

gene id symbol gene type direction distance location
CI01000009_11892226_11892558 NA coding upstream 41265 11892226 ~ 11892677 (+)
CI01000009_11875722_11882183 STAT1B, STAT1 coding upstream 51021 11875486 ~ 11882921 (+)
CI01000009_11835682_11873220 STAT4 coding upstream 60612 11835682 ~ 11873330 (+)
CI01000009_11803818_11808988 SLC40A1 coding upstream 124707 11802384 ~ 11809235 (+)
CI01000009_11789703_11791511 NA coding upstream 142206 11789703 ~ 11791736 (+)
CI01000009_11993879_12004644 NEMP2 coding downstream 58393 11993644 ~ 12004765 (+)
CI01000009_12022660_12022944 NA coding downstream 87309 12022560 ~ 12023388 (+)
CI01000009_12028975_12032758 NA coding downstream 93244 12028495 ~ 12033037 (+)
CI01000009_12050866_12109305 SPEG coding downstream 115522 12050773 ~ 12110098 (+)
CI01000009_12130688_12146560 CTDS1, CTDSP1 coding downstream 195437 12130688 ~ 12146942 (+)
G57792 NA non-coding upstream 98982 11834738 ~ 11834960 (+)
G57719 NA non-coding upstream 111411 11815069 ~ 11822531 (+)
G57790 NA non-coding upstream 146158 11787576 ~ 11787784 (+)
G57789 NA non-coding upstream 146616 11786904 ~ 11787326 (+)
G57787 NA non-coding upstream 153375 11780329 ~ 11780567 (+)
G57813 NA non-coding downstream 3127 11938378 ~ 11938639 (+)
G57724 NA non-coding downstream 232280 12167531 ~ 12168221 (+)
G57737 NA non-coding downstream 236112 12171363 ~ 12172140 (+)
G57850 NA non-coding downstream 253294 12188545 ~ 12188820 (+)
CI01000009_12198114_12221988 NA non-coding downstream 262154 12196699 ~ 12221993 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 166998 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2077355 9853929 ~ 9856587 (+)
G56100 NA other upstream 2803656 9129300 ~ 9130286 (+)
G53651 NA other upstream 5685550 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 6001141 5931718 ~ 5943899 (+)
CI01000009_12432736_12435509 NA other downstream 497307 12432538 ~ 12436017 (+)
G57682 NA other downstream 890218 12825469 ~ 12892339 (+)
G57691 NA other downstream 971193 12906444 ~ 12918465 (+)
G57701 NA other downstream 1071392 13006643 ~ 13023138 (+)
G58028 NA other downstream 1205127 13140378 ~ 13143608 (+)

Expression


Co-expression Network