G57896


Basic Information

Item Value
gene id G57896
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12462546 ~ 12462952 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65941
CGCAGAAGGACGTGTTACTTGGCCGTCGACTGTTGAGCGTCGGTTTGGTGTGTGAGGGTAACTTTGGACCCAGCACATTTCCTGAAGATGTCTGTGTGCGGTGGCTCTTGATGCACTGACTCCAGCTTCAGTCCACTCCTTTTGAAGCTCTCCTAAGTTCTTAAATCGGCTTCGCCTGACAATCTTCTCAAGCCTGCGGTCATTCCTTTCACTTGTACACCTTTTCCTTCCAGTCAACTTTCCATGAATATGCTTTGGCACAGCACTCTGCGAACAGCCAGCTCTTTCAGCAATGACCCTCTGTGGCTTACCCTCATTGTAGAGGGTCTTGATAATCGTCTTCTGGACAACTGTCAAGTCAGCAGACTTCCCCATGACTGCTGTTGGGATTACTGACCTAAACCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65941 True 407 lncRNA 0.50 1 12462546 12462952

Neighbor

gene id symbol gene type direction distance location
CI01000009_12432736_12435509 NA coding upstream 26655 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 71881 12385222 ~ 12390665 (+)
CI01000009_12351325_12366549 PCBP3 coding upstream 95949 12351325 ~ 12366597 (+)
CI01000009_12249416_12290497 COL18A1 coding upstream 171948 12248963 ~ 12290598 (+)
CI01000009_12198114_12221988 NA coding upstream 240553 12196699 ~ 12221993 (+)
CI01000009_12504532_12504815 NA coding downstream 41428 12504380 ~ 12504894 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding downstream 183532 12646484 ~ 12653857 (+)
CI01000009_12854692_12859028 NA coding downstream 391241 12854193 ~ 12861031 (+)
CI01000009_13194613_13197758 NA coding downstream 731485 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 929354 13392306 ~ 13476807 (+)
G57890 NA non-coding upstream 7466 12454786 ~ 12455080 (+)
G57871 NA non-coding upstream 61494 12400478 ~ 12401052 (+)
G57704 NA non-coding upstream 90372 12305639 ~ 12372174 (+)
G57733 NA non-coding upstream 112266 12326123 ~ 12350280 (+)
G57900 NA non-coding downstream 7330 12470282 ~ 12470604 (+)
G57903 NA non-coding downstream 10983 12473935 ~ 12474530 (+)
G57911 NA non-coding downstream 18792 12481744 ~ 12482032 (+)
G57756 NA non-coding downstream 65581 12528533 ~ 12594745 (+)
G57739 NA non-coding downstream 461041 12923993 ~ 12926242 (+)
G57811 NA other upstream 527295 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 695602 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2605959 9853929 ~ 9856587 (+)
G56100 NA other upstream 3332260 9129300 ~ 9130286 (+)
G57682 NA other downstream 362517 12825469 ~ 12892339 (+)
G57691 NA other downstream 443492 12906444 ~ 12918465 (+)
G57701 NA other downstream 543691 13006643 ~ 13023138 (+)
G58028 NA other downstream 677426 13140378 ~ 13143608 (+)
G58382 NA other downstream 1570607 14039757 ~ 14039901 (+)

Expression


Co-expression Network