G57756


Basic Information

Item Value
gene id G57756
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12528533 ~ 12594745 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65787
GTCCAAAATGCTGAGATAAAGTTATGTGTTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTCATGTAAACTTACTTTAAAGAAAATATTAGGATTTTGAGGAAAAAAGGAAAAAAACAATGAGATTCTGAAATTCATATTACATTATTAAATCATCTTTTAAGTCAAGTTGTTGTGCTGATAGCAAAAAAGATTAAATTAGAAAAGTATTTAGCTTTTATTTTTATTTCAGATTTGATTTTAGTTAAGGTTTTAGTACTTTTTATGTGCTTTTGTCATTTTTTTCATGCCTTTTTTTTAATACACTGCCCGGCCAAAAAAAAAAAAAAAACAAAAAAACATAACTTTTGATAGTAAACAAAAATAAAAGGATTTTTATAGTAAGCTCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGACATCAATTACTCACCCTCATGTCGTTCCACACCTGTAAGACCTTCGTTTATCTTAGGAACACAAATTAAGATATTTTTCATAAAATCTGATGGCTCAGTGAGGCCTGCATTGCCAGCAAGACAATTAACACTTTCAATGCCCAGAAAGCTACAAAAGACATTTAAAACAGCTCATGTGACTACAGTGGTTCAAACTAATGTTATGAAGCGACGAGAATACTTTTTGTGCACCCAAAACCCCCTTAAAATAATGACTTTATTCAACAATGTCTAGTGATGGGCGATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTTACATCTTTTGTTCCGAATCAGTGGTTCGGAGCATGTATCAAACTGCCAAAGTCACGTGATTTCAGTAAATGAGGCTTTGTTACATGATGAGTGTTTCGAAATGTCAATGGTTCGCCACTGGGGGGCATGACTTTGGCATGGCCTATTATGCAAAATTCACTTTTGCATGGTGTTTGGCTATAAATGTGTGTTGGCAGTGTGTGTAAATCCAACCACTCATTTTTTTTAATCCCCATAAATCATAAGCAGTGTCTCAGAACAAGCCGTTTCCAGATCCCTGGCAATGTGACATCACATTAGCCACAGGCCCCGCCCACGAATGTTGACAGACACTGCCGTTTTAACATAGAACCGCCCTGAGTGAGTTCACAGCCAGTTGAACAGTCCGCCATTGCACTGACGAACGTCTCGCAAGCATTTTAGGTGTTCTGTAGCTGGATTTGTGAGTGATTTAGAGCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65787 True 1202 lncRNA 0.36 2 12528533 12594745

Neighbor

gene id symbol gene type direction distance location
CI01000009_12504532_12504815 NA coding upstream 23639 12504380 ~ 12504894 (+)
CI01000009_12432736_12435509 NA coding upstream 92642 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 137868 12385222 ~ 12390665 (+)
CI01000009_12351325_12366549 PCBP3 coding upstream 161936 12351325 ~ 12366597 (+)
CI01000009_12249416_12290497 COL18A1 coding upstream 237935 12248963 ~ 12290598 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding downstream 51739 12646484 ~ 12653857 (+)
CI01000009_12854692_12859028 NA coding downstream 259448 12854193 ~ 12861031 (+)
CI01000009_13194613_13197758 NA coding downstream 599692 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 797561 13392306 ~ 13476807 (+)
CI01000009_13549003_13580198 ITGA4 coding downstream 954258 13549003 ~ 13580233 (+)
G57911 NA non-coding upstream 46501 12481744 ~ 12482032 (+)
G57903 NA non-coding upstream 54003 12473935 ~ 12474530 (+)
G57900 NA non-coding upstream 57929 12470282 ~ 12470604 (+)
G57896 NA non-coding upstream 65581 12462546 ~ 12462952 (+)
G57890 NA non-coding upstream 73453 12454786 ~ 12455080 (+)
G57739 NA non-coding downstream 329248 12923993 ~ 12926242 (+)
G58005 NA non-coding downstream 445581 13040326 ~ 13047175 (+)
G58004 NA non-coding downstream 447068 13041813 ~ 13061580 (+)
G58023 NA non-coding downstream 528432 13123177 ~ 13124892 (+)
G58088 NA non-coding downstream 630095 13224840 ~ 13225681 (+)
G57811 NA other upstream 593282 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 761589 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2671946 9853929 ~ 9856587 (+)
G56100 NA other upstream 3398247 9129300 ~ 9130286 (+)
G57682 NA other downstream 230724 12825469 ~ 12892339 (+)
G57691 NA other downstream 311699 12906444 ~ 12918465 (+)
G57701 NA other downstream 411898 13006643 ~ 13023138 (+)
G58028 NA other downstream 545633 13140378 ~ 13143608 (+)
G58382 NA other downstream 1438814 14039757 ~ 14039901 (+)

Expression


Co-expression Network