G57691


Basic Information

Item Value
gene id G57691
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12906444 ~ 12918465 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65722
TCATCTTTGCAGACAAGAGGCTCAGTTGTCTCTGAGGGAGCACTGATAGCTCCAGCTGCATTTTTAGCTCTTATTCTGAATTCACAAGTAGAGCCTTCCTGTAGGTCTGTTACAGTGTATGCACAGCTTTGGACATTCACATGGTTAGCCTTCATCCATGTCTTTCCAGGATGCTCTAATTTCTCAACAATATAGCCTGTCAGTTTGTGGCCACCGTCATACTTGGGTGCAGTCCAAACAAGTGTTACACTGTTTCTTGTAACATTGATCACATCAGGTTTGCCAGGTGGATCAATAGGATCAAGAGCAACAAGAGATTCAGTTGTTTTGCTTGGCTTTCCAAGTCCAGCCACGTTCATAGCTATGACCCTAAATTCATATTCCAGGCCTTCAACCAAACCGGTCACTCTGCATTCTTTCACTCTTAAAGGTGTCTTGTTGGCTCTCTTCCACATTAAGCTATTTCTATCTTTGAATTCCATGTAATATCCTGTGATGGGAGAGCCTCCAGTATCTTTTGGATCAGTCCATGTTAGTATAGCAGACTCATGACGAATACCCACAACTTCAGGTGGTGCTGGAGCCCCTGGTGCATTGAATGGATGTTTAGCCACCACTGGATCAGATCTGAGGAACTCTCCAACTCCATATTTATTTTCAGCACAAACTCTGAAGATGTATTCTGTTCCATCATGAAGTCTTGTAACTCTCATAGAGTTCTTCTGAATTGCAGAAGCAACTGTGACCCATTTGTTAGCAGTAGAATGCCTCTTCTCCAAAATATAGTTGCTAACTTCTGATCCACCATCATCTTTGGGTGGGCCCCATTCTACAGTAATCGCTTCTGCTGTGATTTCATCAAATTTGATAGGACCGGTGCAGATTCCAGGCTTTCCAACAACTTTAATGTCAATAGCTGATTCCTCTGTTCCAGCACTGTTTCTCAAAATGATAGTGAATTTGCCAGCATCACCTCTATGGCAATCACGAATCAGCAAGATCGTGTTTGTTGCAGTTGATTCAACTGAGATTCTGCCACTATCTGATAAAGTAACATCACCCTTTTTCCACGTGACTGCTGGAGCAGGTATACCTATAATAGGGATATTAAGACGAACAGTACTTCCTTCCTTTGCCACATAGCTAGAGTCTGGCAAGCCTTTAAGGTTACAGTGTGGAGCCACTATTTGATCTTTAGCCAAGACAGTGAGCTCAGTTGGTGGTCCTTCAGCTGCTTCATTAATGGCCTTGACTCTGAACAAGTACTCCTTTCCTTCTACAAGATCACTTATTGTGTACTGTGTGAGCTTAGACTTCATTACAAGCTTCCATTTGTCTTCCCCTTCACTGATCTCTAGAGCATATGCAACAATATGGCTTCCACCATCACTGATTGGCTTCTTCCAGCCAAGAGTGCAAGAACTCTTGGTGATCTCTGAAGGTTTAAAATCTATAACTGGTCCAGGTTGCTCTGAGGCTTTGACTGGTCCAGCTGTCTCACAACCCTCACCAATGCCGTATACATTTTCAGCTAGGACTCTAAAGCAGTAAGATTTACCAGCTTCGAGATTAGTAATCCTGAAAGATGTCTTGGAACACTCAGGAGCAACACAGGTCCATGCCTTTCTCTCAGCCAGACGTTTTTCAACAACATAGCTCTTGACTGGACTACCACCATCAATTAACGGAGCATCCCAAGTAATTGATACATGGTTCTTTGAGGTCTCCTTAACAATCAGATTGACTGGGGGTCCAGGTGTGTCTAGTACTTTGACAACAATGGTATATGACTTGGTACCACTACTGTTTTCTAGAGTTAGGACATATTTGCCGGCATCATATCTGTTGATATCCTCACAATAAAGGAAGGTATCCCATTCAGTTGTCTTGATCATAAGTCCTTGTCTCTCTTTTAAGTTTGCATTGACCTTAGTCCATGTTGCCTTTGGAGCAGGACGTCCTCTCAGAGGTACATAAATTCTCATTGTGACTCCAGCACGTAAAACTAGTGCTTTTCTGAGATCTGCATCAAGTTCAGCCTCAGGGGCAATCAAGATATCCTTTGCCATATGTTTTCCAGGAACTTCACTTGGCTCTCCAAATCCAATCTTGTTTACAGCAGTAACACGGAACTGGTACTCAGTGTTATCCAAAAGACCAGTAACATTAAATTTTGTTGCCTGGAGATTCTTTGGCACATTGCACTTCAGCCAGTCTTCTGCATCTGCTCTCTTGAACTCAACAAGGTAGCCCAGAATTTCACATCCACCATCATAGGCTGGCTTGGTCCAGGACAAACTGATTGAACTGTGTGTAGAGTCAACAACCTTTGGAAAAGCAGGTGGTCCAGGAGGATACACTGGGTCCACTGCAGTAGCACCAACTGATGGATCACTTGGTTTGCCAAGACCAGCTTTATTGAGCGCAATGACTCTGAATTCATACTCTGATCCCTCTGTAAGGCCTCCAGCTTTAATTGTCCTGTCAATAACTGGTCTTCTATTCACTTTAGCCCAATTGAGGTCTTGAGTTTCACGTTTCTCAACCAAATATCCAAGAATGGGGGCCTTGCCATCATCAGCAGGGGCCTTCCAACTAACAGTCATGTGATCTCTGGTGATATTGGTAATAACTGGAGGTTCACATGGTCCTGGGACATCAAATGGATTCTTGGCGATCACTGAATTAGTCACAATTGGGTCTCCAACACCATACTTGTTCTCAGCACTGATGCGGAACTCATATTCATGGCCTTCAATGAGTTTCTCCACAGAACAGTCCGTTATCTGACCATTAATGTTAGCAGTAACTTGGGCCCAGTTAGCTCTGCTTGTTTCACGTTTGTCAACAATGTAATTTGTGATTTCAGAACCACCATCAGCAAGAGGTGGCTCCCATCTCAGTTTCACTCGGTCAGCAAATACATGGCTTATCTTCACTGATGCTGGGGGTCCAGGTTTATCTAGAACCTTCAATTTAATGTTGCCAGACTTTGTGCCACTTGGGTTCTCAGCAGAAATGGTGTACTCGCCAGACTCTTTTCTTGTCACAGAGAACAGTTCCAAGGAGAAGAGATGCACCTTCTGAGTCATTTTCATACCTTCAGCCAGTTTCAATGGAACACCATCTCTCTTCCAAGTGACCTTTGGCATTGGTTTGCCATAAACTTCAGCCTCCAAGCTGACATTTGCTCCAGCTTTGACGACAATTAAGTTCTTCATTTCAAGACTAATCTCAACTCTAGGTGGAACATGCTCTGCAATAACTGTGATAGCATCAGATTCCTCTGAGGGCAGACTGACGTTAATTGCTGTCTTTGCAATTATTCTGAACTTGTATTGGGCTCCCTCTTCAAGTCCAGGAACAATGTATTCTTCCTTTGGTACATTTTGACTGCTTGTGTTGACACGCACCCATTTGTCACCTGGAAGCTTCAGAGATTCAACATAATAACCAATGAGTTTGCTTCCACCATCATGTTTTGGACGGCTCCAGACAAGAGAGACCGAATTTTTGGTCACATCAAGAACTTGGGGTTTGCCAGGTGGATCAACTGGAGATCTCGCAGTGATAAAATCTGTCTGCTTGCTTGGTTTGCCTTGTCCTGCTTTGTTAACAGCAGACACTCTGAAGGTGTACTCTAGACCATCAATGAGGCCAGAGCATGTATATTCAGTTGAGCGAATAAGGACCTCATTTGCCTTGGTCCACAGGAGGCTATTTCTTTCTTTGCGCTCAATGCAATATCCTGTGATGGGACTGCCACCATCGTTCACTGGTTTCTCCCAGGACAACACAACAAAGTCCCTGTTGATTTTGTTGACACAACAGTTCCTTGGCTCACTGGGTGGATCAAATGGATGTCTAGCAATGATTTTATCAGCATAAATTGGTTCTGAAATTCCAAAGCGGTTTTCAGCACGGACACGGAAGCCATACTCTTTGCCAGATGTGAGCTTTCCCACTCTGCAGCTGGTCTTGGTGCAAGATGCAACTGTGACCCAGTCACCTCTTGTCACATCACATTTCTCAACAATGTAGTTTGTGATGTTACTGCCACCATCTTCAGAAGGTGAATCCCATGCAAGTGTGCAGGCATCTACGTCCACCTCAAGAATTTGTATAGGACCTTGTGGAGGACCAGGGATGTCCATAATGATTATTCTGAGGATCTGGTTGACCTTAGCAGTGCTGTTTTCAGCAGAAAGACTGTAATAACCACTATCCTTCCTTGTAACTTCTTTGATCAAAAGTAAACATGTGGTTGGTGTTTTTTGTATGGAGAGACGATCAGATGTAACTAAATCATCATTTCCTCTTTTCCATTTTGTGACTGGTGCAGGCTTCCCGGACACAAGAGCCTCAACTACAAGTTTAGTTCCTGCTCTTGCTGTAATCACATCAGACATGATGATCTTTGGTCCCATCAGCTGTTCCTTGACCTCAAATATGCCCTCAGCTTCTCTTGCCAAACTGCATCCTATTGCGTTTCTCGCAGCAACCCTGAATCTGTACTTAGTGTTTTCTTTCAGTCCAGCTACAACAATGGTCAAGTCTTTCACAACCGAGTATGATGTCCATTTGTCCTCAGGTTGACCATCCTGCTGGTATTCAACAATGTATCCATTAATCTTAGATCCACCATCTCTAAGTGGCTTCAGCCACCCAAGAGTTGCACTGTTTTTAGAAATTTCTAATACATCCATCTTCTTTGGAGGATCAGGCTCACTCTTGGGATCTACAGCCAGGTAGGACTTTGGAGAGTCTTGAGGCAAACCGATGCCATACTTGTTAACCGCCATCACCCGGAAGTAGTATTCTATTCCTGGTGTCAGATTTGTGATTTTGAAGCTTGTCTTCTTCAAGTCATTTGTGCAATTTGTCCATGTTTTCCGGTCAACCTCACGCTTTTCAACAACATAGTTTAGGATTGGACTGCCACCATCATTTTCTGGAGGTAACCATGCAAGCTGGCAGGTTGTCTTTGTGATATCAGTTGCCTCCAGTCCACCAACAGGACCAGGAGTATCTAAGACTTTTACACGAACAAATACAGCCTTTTCTCCAGAGGCATTTGAAAGAGTCAAAGAATATCTGCCAGAGTCTTCACGTGAACACTCAGGAATCACAAGGAAGGTCATTGTATCGATCTGATCCACATGGCCCCTTCTAATGACATTGTCAACACCGATGCGCTTCCAAGTCACTTTAGGTGCTGGTCTTCCTCTAATTGTTGCAAAAAGTCTGATAGGACATCCTGCTCTAACGCTAAGGCCTTTTCTTAGACTGGCATCAAGATCAATCTCTGGTGGTTCATTGATCTCCTTTGGTGATACAGCTTCCTTGAGTTTTGCAGGACGGCCCATGCCAACTTGGTTTTGAGCAGACACCCGGAATTCATATCCCTGTCTCTCATCCAAGTTAAGAATTGTAAATTCAGTTAGGACAAGCTGTCCAGAAGTATTACATTTCTTCCAGCCTTCCTCTGGATCTCTCTCTTGTTCACCTTCCATTTCCACCTTATCCCTCATTTCAACCAGATATCCAATAATTGGAGCACCACCATCATACACAGGCTTCGTCCAGCTAAGTGTAATCGATGTCTTTGTGCTATCAACTACTTTAAGGCTGCCAGGAGGACCAGGGGGCTCAATTGGATCTTTTGCAGTGACAGGTCTGGATGCTTTGCTTGGTTCTCCCAATCCTACTTCATTTTCAGCTTTGACACGGAATTGATAATCATGGTTAGGGATCAGATTGGTGACCTTCATACGTCTCTCAGAGATAGGGCTCTTTGTGACAGGGACCCATCGAACGGCCCGCTTTTCTTTTCTCTCCAGAATGTACCCAGTTATAGACTTTCCACCATCATTCTCAGGAGGGGCCCATACCACAGTCATCTCATCTTTACCAATTTTGGTTACCTCAGGTGCATCAGGTGGACCAGGCCTGTTGTATTGTGTCTTAGCAATAATAGGCCTGCTCTCCATTGGTGGCCCAGTTCCCATTTTGTTTTCTGCTCTGACCCTGAATATGTACTCATTTCCTTCAACGAGGCGTGTTACATTACAGTAGTTGGTGACAACAGAGGCAGAGTAAGTGGACCAAACCATTCTTCTGGTCTCACATTTTTCTAGAATATAGCTGTCCACCTCACAACCACCATCATCCTCTGGAGGATCCCATACAACTCTGCACTTATCTGTGGAAATTCCAGAAATCTTCAAATCTCTGACAGGTCCTGGTATATCCAAAACTGAAATATTGGCATATGCTGTGAATGATCCTGCTGAGTTTGTAGCAGTGACCACATATTTTCCAGTATCACTACGCTTGGTTTTAGTAAGAAGGAACTTAGAGTAATCATGTCCAGTGTCAATGCTGATCCTTGGGTTATCGCCTGTAGCCTTGTCCTTCACCCATGTAACCTCAGGCTGTGGTTTTCCTCTAAGACCAGCCTCAAGTCTAACTGATTCACCAGCTTTGACCACAATGGTACCAACAAATTTCAGGTCAAGAACTGGTTTCTGAATTTCTTCTTTGACAAGAATATCAGATGTCTTAACCCAGGCACTATCTCCTCCGTCATTTGTTGACTGGACTCTAAACTGATAGGTGTGGTTCTCAACACATTTGTCTACCAAGAAGAATGTCTCTTTCAGGACTCCCTCATGTACCTTCTCCCACTCTTCAGCATCCTTTGCTTTTCTCTCCAAACGGTAGCCCAGGTTAGGACTGCCACCATCATAATCTGGTTTTCTCCATTTAAGAAAAACAAAGTTCTTACCAATATCACTGACGTGGAAGTTCTCTGGCTCACCTGGCTTCTGAAGTGGGTCTATTGCAAGGATAGGAGTTTTGGTTTCTGTTGCTGGTCCAGGACCACACTTGTTCTCAGCAGACACACGGAATAAATATTCATGATTTTCCATGAGCTTTGCCTTTACCATACGATTTGTGCAGTCAGATGATATCATTGACCATGCTCGTATACTTGGCTCCCGACATTCCACAATGTAATTTGTTATCTCAGTGCCTCCATTATCCTCAGGAGCATCCCAGGACACCATGCAAGAGTTTTTATTTACATACGTCAACTTAAGATTCTGGCAGTGCCCAGGTCTATCTAGAACATTTACAGTAATAGTAGCTGAGGCCTCTCCAGCTTCATTAGCAGCCTTAAGTATATATTTTCCATGATCTGCTCTGGTTGCTTCCTTGATACGCATTTGCACTACTGGGAAGTTGTTTATCAGAGTGGTACGCTTGTCCTTTTCCAAAATGCTTTCACCTTTGCTCCAAGTGATTTCTGGATCAGGTCTTGCTTTCACATATGCTACAACATTAATGTTATGTCCAACACGGACAGTCACACGGTCACGGCATGTGGCATCCATCTCAATTTCTGGAGGAATGACAATATCCTTAGCAATAACTGACTCTGGAATTTCCCTTGTCTCACCTTCTCCAATCATGTTAACAGCTTTAACACGGAACCTGTATTCTGTGCCCTCTGTCAGTCCCTTTACTCTATAAGCACATAGCTTAATCAGATCATCCTTATTGACTTTCTCCCACTCAGCACCTCCTTTCTGGCATTCAACAATATATCCTATAACTGGACTGCCTCCATCTCTTGTGGGTCTGATCCAGACTAAGTCAGCATATGTACAGCTGTAGTCCTTTATTTTAGGGTTAATTGGAGGTCCTGGAACAGTAACTTGTCTGCAAGGTTTGGCAGGATCTGAGATAGGTGAAGGTCCACTAAAGCCAGCGATGTTTTCAGCAAATACTCTGAACTCATATTCAATACTTTCAAAAAGCCCAAGCACTCTGTATCTAAGGTCCTTGCAGGGTGTTTTATTCACTCTAATCCATTTGCCTCCTTTATGTCTTCGCTCAATAATGTAACCACTGATTGGACTACCACCATCAAACAGTGGCATTGTCCATCCAAGTGTGAGTGCATCTTCAGCAATATCAGATGCAACTGGTTTTCCAGGATGGCCAGGGGGCTCAAACTGGTGCCGGGCTACAGTTGGTGCACTTTCAAGAGCTGCACCAATTCCCATTTTATTTTCAGCACGAATTCTCACAACATACTCAACTCCTTGCTGGAGACGAGAAATCTTGAGCCTTGTGGAAGTGCTGCCAGAACTTACTCCTCCCCAAGTTTCCTTATTTGATTCCCTCTTCTCAACAATATAGTTCATAACGGGGCTTCCACCATCCTCTTTGGGAGGACGCCAGTCAATGACCATGTATTCAGGAGTCACTTCATGGATATTAACAGGACCTATTGGGGCAGATGGCACATCAAGCACCGTGACATTCAGAGAAACAGTCTTACTTCCTGCTGAGTTAGACACTGTGAGAATATAGATTCCGGTGTGACTTCTTGTGCAATCGGCAATGCTCAGAACAGTGGAGAAGTTGTCGGTGTCGATTTTGATATTGCCTTCACTCTTGATTTCCTCTCCATCAATGACCCATTTGGGAGTGGGAACCGGAAGTCCTCTCATAATGGCAGGCAATCTAATAGTGCTTCCAGCTTTCACAATGATTCCCTCAATCAACTTCACATCAACCTCAACAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU65722 True 8597 TUCP 0.44 20 12906444 12918465

Neighbor

gene id symbol gene type direction distance location
CI01000009_12854692_12859028 NA coding upstream 45413 12854193 ~ 12861031 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 252587 12646484 ~ 12653857 (+)
CI01000009_12504532_12504815 NA coding upstream 401550 12504380 ~ 12504894 (+)
CI01000009_12432736_12435509 NA coding upstream 470553 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 515779 12385222 ~ 12390665 (+)
CI01000009_13194613_13197758 NA coding downstream 275972 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 473841 13392306 ~ 13476807 (+)
CI01000009_13549003_13580198 ITGA4 coding downstream 630538 13549003 ~ 13580233 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 778060 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 833959 13752424 ~ 13753823 (+)
G57756 NA non-coding upstream 311699 12528533 ~ 12594745 (+)
G57911 NA non-coding upstream 424412 12481744 ~ 12482032 (+)
G57903 NA non-coding upstream 431914 12473935 ~ 12474530 (+)
G57900 NA non-coding upstream 435840 12470282 ~ 12470604 (+)
G57896 NA non-coding upstream 443492 12462546 ~ 12462952 (+)
G57739 NA non-coding downstream 5528 12923993 ~ 12926242 (+)
G58005 NA non-coding downstream 121861 13040326 ~ 13047175 (+)
G58004 NA non-coding downstream 123348 13041813 ~ 13061580 (+)
G58023 NA non-coding downstream 204712 13123177 ~ 13124892 (+)
G58088 NA non-coding downstream 306375 13224840 ~ 13225681 (+)
G57682 NA other upstream 14105 12825469 ~ 12892339 (+)
G57811 NA other upstream 971193 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 1139500 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 3049857 9853929 ~ 9856587 (+)
G57701 NA other downstream 88178 13006643 ~ 13023138 (+)
G58028 NA other downstream 221913 13140378 ~ 13143608 (+)
G58382 NA other downstream 1115094 14039757 ~ 14039901 (+)
G58455 NA other downstream 1328230 14246695 ~ 14258526 (+)
G58558 NA other downstream 1578471 14496936 ~ 14501514 (+)

Expression


Co-expression Network