Gene
RNA
| Item | Value |
|---|---|
| gene id | G57739 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 12923993 ~ 12926242 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU65770 | True | 1425 | lncRNA | 0.46 | 5 | 12923993 | 12926242 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_12854692_12859028 | NA | coding | upstream | 62962 | 12854193 ~ 12861031 (+) |
| CI01000009_12646484_12653748 | GULP1, GULP1A | coding | upstream | 270136 | 12646484 ~ 12653857 (+) |
| CI01000009_12504532_12504815 | NA | coding | upstream | 419099 | 12504380 ~ 12504894 (+) |
| CI01000009_12432736_12435509 | NA | coding | upstream | 488102 | 12432538 ~ 12436017 (+) |
| CI01000009_12387605_12388405 | LRRC3 | coding | upstream | 533328 | 12385222 ~ 12390665 (+) |
| CI01000009_13194613_13197758 | NA | coding | downstream | 268195 | 13194437 ~ 13199701 (+) |
| CI01000009_13394582_13476351 | UBE2E3 | coding | downstream | 466064 | 13392306 ~ 13476807 (+) |
| CI01000009_13549003_13580198 | ITGA4 | coding | downstream | 622761 | 13549003 ~ 13580233 (+) |
| CI01000009_13696525_13718933 | SSFA2 | coding | downstream | 770283 | 13696525 ~ 13718933 (+) |
| CI01000009_13752424_13753460 | NA | coding | downstream | 826182 | 13752424 ~ 13753823 (+) |
| G57756 | NA | non-coding | upstream | 329248 | 12528533 ~ 12594745 (+) |
| G57911 | NA | non-coding | upstream | 441961 | 12481744 ~ 12482032 (+) |
| G57903 | NA | non-coding | upstream | 449463 | 12473935 ~ 12474530 (+) |
| G57900 | NA | non-coding | upstream | 453389 | 12470282 ~ 12470604 (+) |
| G57896 | NA | non-coding | upstream | 461041 | 12462546 ~ 12462952 (+) |
| G58005 | NA | non-coding | downstream | 114084 | 13040326 ~ 13047175 (+) |
| G58004 | NA | non-coding | downstream | 115571 | 13041813 ~ 13061580 (+) |
| G58023 | NA | non-coding | downstream | 196935 | 13123177 ~ 13124892 (+) |
| G58088 | NA | non-coding | downstream | 298598 | 13224840 ~ 13225681 (+) |
| G58103 | NA | non-coding | downstream | 320099 | 13246341 ~ 13248989 (+) |
| G57691 | NA | other | upstream | 5528 | 12906444 ~ 12918465 (+) |
| G57682 | NA | other | upstream | 31654 | 12825469 ~ 12892339 (+) |
| G57811 | NA | other | upstream | 988742 | 11933942 ~ 11935251 (+) |
| CI01000009_11761868_11765848 | ORMDL1.S, ORMDL1 | other | upstream | 1157049 | 11761606 ~ 11766944 (+) |
| G57701 | NA | other | downstream | 80401 | 13006643 ~ 13023138 (+) |
| G58028 | NA | other | downstream | 214136 | 13140378 ~ 13143608 (+) |
| G58382 | NA | other | downstream | 1107317 | 14039757 ~ 14039901 (+) |
| G58455 | NA | other | downstream | 1320453 | 14246695 ~ 14258526 (+) |
| G58558 | NA | other | downstream | 1570694 | 14496936 ~ 14501514 (+) |
