G58004


Basic Information

Item Value
gene id G58004
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13041813 ~ 13061580 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66052
ATTTACTGGCCATACTGAGAACGGTTTCATACTCCCTGATTTTATCCCTGACACGCTGATGTAGCTGTATAAGCTCAGAAACTTTCTCATTCTTCTCTTTTACCGGTATCCCCTTCAAGCCGAGCAGCTCAGATGTCTTAACCAGGAATTCCACCTCTGCATTCAGTTGCATGAATTCTGGCTTTACAGCATTGAATTTCTCCTGTAGTTTAGACACAGGCTGAGGATCACCCCCCAAATCAACCTTTGATGCTGGAGCAAAAATCTCCTCCATTGCCCTTAAATCATGAAGAACCTTTTTAAGCTGATCTTTACATTTTTTCCATTGCTTCTTCACAGATTTTATCTGACTATAATGAAGTTGCCAAGATGTCCACAAGTCTGCTAGTTCAGATTTCTTCTTGGTCAGTGTCTCCATATATTTTTCTACAACATGCACTGCTGCTTTAACGTTTAGATTCAGGCTGCCACTGATCATGTTGGAGGAATTAATAAAGTTGTTTCCTAGATCCTGCATGGTAAAAAACCTCTGCAGCAGTGACTGCCACTTAGCATCCAACATTTCCTTCATTGATGCACTTGCTCCTTCATTTTCCTTAAGTTTGGCAAGGAGCTGCTCATGTTCCTCTAGAAGCTTTTTGGTCTCATCCTGGTTGTTTCCAATCTCCAAGAGGTTGGGTTGTGCTTCAATCAGCTGTAGATGCACCAGCTCCCCACACTTGAGCACTGCTATAACAATCTGTGCGTCTCCAGCCTGTACGGCCACGGTGCTGATTGTGGTTGTGGAAGGCTGACCTCCAGCATCACCTTCACTGGACATTGTGGACATTCTCCCCTTGAGTCCACACGTCCAAGAATCAGAAAGGTCAGAACAAAGCTCAGTACACACAGGTTCTTGCTGTAATCCAAATCTCCCCTTTTCAGAAGTCAACAGCTTTCCCGGCAGGTGGCTAAACCCAAACAGAGTAAAGTCTCTGGGGTTTTTAAAGTGACAAAGCCCACGTCCACATCAAAGATCCTCTTGCCCTGCAGGTAAACTCCTCACAACCCCTCGAAGGACTTTCTTGCAGGCTCCACCAGGGCCACTGGCCTGAATGAACAGTATGGTGCAAACACAGTCGTCTATGTTGACAG
>TU66053
GGCGGAAGGAAGGCTTTTAGTGATTTTACTTCATGAAAGTTGCATTGATACTTCTGGCTTTAATGTTTGTATTGTGTGGTAACCGTTTTATAAAAATAATAAGATACTCGAGGCTAGTGCTGTATCGTGAATAAGTCATGGCTGAAGGGGTTGCAGGCACTCCACTTCGTGCCTAACAACGATACAGCACAGCTTCTCGTACCTTATTGCTTACATATATTATGTTTTAAACCCTCAAGACACTGCCATAGATTTATAAAGACCACTGATTGTTAAGCTTGTGTTAAAATGCTCTACAAAGTTTCTTACCATGTTGGAGGAATTAATAAAGTTGTTTCCTAGATCCTGCATGGTAAAAAACCTCTGCAGCAGTGACTGCCACTTAGCATCCAACATTTCCTTCATTGATGCACTTGCTCCTTCATTTTCCTCCTCTTCCTCTGGCTTGTTCTTGTAGCATTCCTGAAGTATCCTTATCTGCTCCTCAACCTCATCTGCACAGCGCAAAAAGTCCACATAGGGCCTGAGGCTCTCCACATGCGATGATATGTTCCTCACCAATGTTTTCATCTCCTCTGCCAGAATTGAAGCTTTGTTAGACAACTCGACTGTCTCTGAGGATTCCAGTCCCTTTAGTTCTTTTATAAAACCAGCTATGGCCTCTGATTCTCTCATAGCATCCTGAGACTGTGAGAGTAGCTCAACATGCTTATTAAGGGTGTCCTCTGCCTCAGTTAGAGATGAACCTGGCTCTGTGCTGGCAGAGAGGACACTGTTGCTACTCTTAATCCAAGCAGAGACCTTATCCACTAGTTCTTCGAATGAGGACACCAGCTGCTGCCTTTTGCCTGATAACGCTCTGTGGGCATGACACTCGTGGCTCAGAACCTCAATTCTCTCTTTGATGTATCCCAGCATTCTTTGTATCCCACCAACTTGGGCACTTTGTGGGTCGAGCTTCTGAAGTAACAGCTGACCTCTCTGAAGAGGCTCGCTGGATGAGTCTTTTATACTGCGTGAAAACTCTTCATGTTTCCTAGCCAGCTCAGGTAATGACAGAGGTTGAGTCTTCAGATCCTTTATAGCAATCTCTATGGTGCCCAGCACCTCAAATGCNNNNNNNNNNNNNGCGCTGAAGTTGTGTGGACTCATTCGAGGAAAGCAAATCTGATGCCTGCTGTAGTAACCTCTCGACCAGCACACCCCAGTCCTTGGCTTTCTGTTCAAACTCTTTGCATTCATGTAGTAAGTCTTCATTTTCTGACAGAGATGAACCCAGATGACTGTTTTCCAAGAGCAAAGTAGTCTTTTCCTTAAACCATTGTGATACCTCCTGTTCCTGTCGCTCCCATTGGCAAATGCGGGAGATTGTTTCCAGCTCATGCTGCTGTTGTCTCATGCAAAGGTCCACTTGCCTGCGTCTGTCCTGCAGAATCTCCATTAGACCTTCAACCTTTCCAAAGCTGCTCCAGGCCCCATGAGAAGCTCTGCCATACTGCAGGGCCTTCTCGGACTGGAAGTCCTTCAAAAATTCTAGCAACTCACGACTCTTATTCAACACCAGCATTGACTTCTCCAACATCCCTCTTTTAATACTGCTGTGTCTCTGAAGCAATTCATTCATGTCATCTGCAGTGGTCGACTTCCGGCCAACACTCTGAAAGCCCTCAGCTTCATCTATCCTGATGGCAAACTACAATCAAAAAAGTATTTAAATTATTATGAAATATTATTACAGTTTTAAATAATTGTATTAATATATTTTAAAATGTAATTTATTCATGTAACCCTTCAGAAATCATTCTAATCCTAAAACATTTCTTATTATTATCAATGTTGAAAATGATGCACGGCTTAATATTTTCAGTGGAAACCATAACATAACAAGAACTGTACACAACAACAAACATGTGCCCTGTGTATAGTCCAGGTGATATGTGAAAATAATGTTCACTTTTTCATAAAAGCATGA
>TU66056
GATAAGGTCTTTTTTTAAAACACTGTAGCATCTGCTCTTTGTCTTCTCACCTTTGTGGGTCGAGCTTCTGAAGTAACAGCTGACCTCTCTGAAGAGGCTCGCTGGATGAGTCTTTTATACTGCGTGAAAACTCTTCATGTTTCCTAGCCAGCTCAGGTAATGACAGAGGTTGAGTCTTCAGATCCTTTATAGCAATCTCTATGGTGCCCAGCACCTCAAATGCNNNNNNNNNNNNNGCGCTGAAGTTGTGTGGACTCATTCGAGGAAAGCAAATCTGATGCCTGCTGTAGTAACCTCTCGACCAGCACACCCCAGTCCTTGGCTTTCTGTTCAAACTCTTTGCATTCATGTAGTAAGTCTTCATTTTCTGACAGAGATGAACCCAGATGACTGTTTTCCAAGAGCAAAGTAGTCTTTTCCTTAAACCATTGTGATACCTCCTGTTCCTGTCGCTCCCATTGGCAAATGCGGGAGATTGTTTCCAGCTCATGCTGCTGTTGTCTCATGCAAAGGTCCACTTGCCTGCGTCTGTCCTGCAGAATCTCCATTAGACCTTCAACCTTTCCAAAGCTGCTCCAGGCCCCATGAGAAGCTCTGCCATACTGCAGGGCCTTCTCGGACTGGAAGTCCTTCAAAAATTCTAGCAACTCACGACTCTTATTCAACACCAGCATTGACTTCTCCAACATCCCTGAG
>TU66054
GAAAATTTAAAATATCTCACTTCCTGTTGAGTTTTCAGATCTTGCACCCAGGGACTTTTTTGTAGGTATTGGGCTGTTACATGTGTCTGGTGAATGTCATACTTGTACGTGAAACGTAGCGTGAAGGGCGCTTAATTGAAATTTTGTAGGTGGCGCTATCGAGCCATTTTGCCACGCCTAATTCTGAAACCCATATCAGGCGTAAATTTTCACCACTTCTGATGCGTGTGCAAAGTTTCATGAGTTTCGAGCATGTTTAGGCTCTAAAAAATGCGATTCATTTCGGAGAAGAAGAATAATTGGCCGAGCAATTACAATAGGGTCCTCACACCATCGGTGCTCGAGCCCTAATAAAAACACTTTTTCTTCTGGCAGAGTGACTTACCTCCTGTTCCTGTCGCTCCCATTGGCAAATGCGGGAGATTGTTTCCAGCTCATGCTGCTGTTGTCTCATGCAAAGGTCCACTTGCCTGCGTCTGTCCTGCAGAATCTCCATTAGACCTTCAACCTTTCCAAAGCTGCTCCAGGCCCCATGAGAAGCTCTGCCATACTGCAGGGCCTTCTCGGACTGGAAGTCCTTCAAAAATTCTAGCAACTCACGACTCTTATTCAACACCAGCATTGACTTCTCCAACATCCCTCTTTTAATACTGCTGTGTCTCTGAAGCAATTCATTCATGTCATCTGCAGTGGTCGACTTCCGGCCAACACTCTGAAAGCCCTCAGCTTCATCTATCCTGATGGCAAACTACAATCAAAAAAGTATTTAAATTATTATGAAATATTATTACAGTTTTAAATAATTGTATTAATATATTTTAAAATGTAATTTATTCATGTAACCCTTCAGAAATCATTCTAATCCTAAAACATTTCTTATTATTATCAATGTTGAAAATGATGCACGGCTTAATATTTTCAGTGGAAACCATAACATAACAAGAACTGTACACAACAACAAACATGTGCCCTGTGTATAGTCCAGGTGATATGTGAAAATAATGTTCACTTTTTCATAAAAGCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66052 False 1134 lncRNA 0.45 6 13041813 13061580
TU66053 False 1972 lncRNA 0.42 9 13043117 13051465
TU66056 False 696 lncRNA 0.46 4 13047243 13050867
TU66054 True 1027 lncRNA 0.40 2 13050224 13051465

Neighbor

gene id symbol gene type direction distance location
CI01000009_12854692_12859028 NA coding upstream 180782 12854193 ~ 12861031 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 387956 12646484 ~ 12653857 (+)
CI01000009_12504532_12504815 NA coding upstream 536919 12504380 ~ 12504894 (+)
CI01000009_12432736_12435509 NA coding upstream 605922 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 651148 12385222 ~ 12390665 (+)
CI01000009_13194613_13197758 NA coding downstream 132857 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 330726 13392306 ~ 13476807 (+)
CI01000009_13549003_13580198 ITGA4 coding downstream 487423 13549003 ~ 13580233 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 634945 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 690844 13752424 ~ 13753823 (+)
G57739 NA non-coding upstream 115571 12923993 ~ 12926242 (+)
G57756 NA non-coding upstream 447068 12528533 ~ 12594745 (+)
G57911 NA non-coding upstream 559781 12481744 ~ 12482032 (+)
G57903 NA non-coding upstream 567283 12473935 ~ 12474530 (+)
G57900 NA non-coding upstream 571209 12470282 ~ 12470604 (+)
G58023 NA non-coding downstream 61597 13123177 ~ 13124892 (+)
G58088 NA non-coding downstream 163260 13224840 ~ 13225681 (+)
G58103 NA non-coding downstream 184761 13246341 ~ 13248989 (+)
G58118 NA non-coding downstream 207826 13269406 ~ 13269639 (+)
G58153 NA non-coding downstream 274055 13335635 ~ 13335862 (+)
G57701 NA other upstream 18675 13006643 ~ 13023138 (+)
G57691 NA other upstream 123348 12906444 ~ 12918465 (+)
G57682 NA other upstream 149474 12825469 ~ 12892339 (+)
G57811 NA other upstream 1106562 11933942 ~ 11935251 (+)
G58028 NA other downstream 78798 13140378 ~ 13143608 (+)
G58382 NA other downstream 971979 14039757 ~ 14039901 (+)
G58455 NA other downstream 1185115 14246695 ~ 14258526 (+)
G58558 NA other downstream 1435356 14496936 ~ 14501514 (+)
G58649 NA other downstream 1588144 14649724 ~ 14652022 (+)

Expression


Co-expression Network