G58023


Basic Information

Item Value
gene id G58023
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13123177 ~ 13124892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66079
TAATTCATGTGATATTGATTCACATAGTATGCTTCACTAAACATTTAATAATGATTCATAAAAAGAAATATACAGTATAAACTAATGAAGAAATCATTTAAATATATTATTTTATTGAAAATGTAGTATCTTTATGTACAGTCTCTCATACATACATATATGGACTATGAAATTCCACAGCCAAATAAAGAATTCTCAGTGAATGGAAACTGTTCTCTCTTGATCTCTAAAAATAAATGTACCAAATAACGTACCTAGTTCTCCTCCAGCTCATAAAATACAACTAGTATTGCAACCTGGAAGGTAAACATTAAATACACAATGGAGAATATCAATATTATTTATGATCTATACATTATTGCATCATCAGAGAGCTGCAGACGAGTACAGTCTCGTGACAAATAAGGATATCACAGAGAGATGAAAGGCCCACGGTTGTCCTATTACACAAAAGAGAGTTTATTTCATGATGAAAACAGATTGAATCTACTTATATGACAAAAAGAGGAACCCGAACACATGTGGAGAAGAGAAATGCTGTGTTTCCTGTCAGATAAAAGGATAAGAGTGGGCGGCACTGAAGAACTGGTGATTGAGCTTATTGACTACACGATACAAGACAGCACACAGGCCAAAAACTGCATCACAGGCTCCCTGACAACATCAAGCCGTTGACTGAACACGTACTGTCCTACGGTAAGATTTGGGATTGTTTCTGACAGCGCTGCGAGGCATGTGCTTGTCCGGGGTTGGTTGAGTTGAAAAGGAAGACCATGATAATTCAAGTCTTTCAGGAAGCAGTTCAACACTTTTCTTGTTTATTTTTAGTGTTTTCAAATGCAAAAGTCCTCACTAAGACGGCAGATCCTTCCTGGGTTTTGCGATGGTGAGGACGGTTGAGGATAAAGTTTCAATAAATACACCATTGAACTTCGGCACGCAGCCGCAGTGTGGCATAGTTCGAGAAACGTCCGCTTCGTTTTGGGCGCTTGCTCAGTAAGGCGCAAATAGGATGGAGCCCGCGGTATGTCGGATCGGTCCCGGAGCGGCGCGGAGAAAGGAGTGCGGAAGTGAGGCCGTCTGAAAGATGGAGGTGTTGGGACGAGGGTGGAGGGAGATGGACGGGACTGTGGTGGGGGCGAAGGGTGTGTGGAGGAAAGCCGGTGATATGGGCTTCGCCAAGTCCTTCTGCAGGGCGAGTTTGGCCTGGAGGAAAAAGAAAGAATTGAACACTGAATCACTTTGGGGAAGGAGAAAGAACAGTGTCTCTGTCAATAAAGAAATTAGGACTGCACAATTAATTGAAAGGACACTGATTATATGGCCTAGTGGGATTATTTAACCTGTGATGTAATTAAATATATAGTCTGCATGCACCATGCACATCTGAGGTTTTTGAAATTGTTTTTAGATTTCGAATAACAAGCATATTAAAAATAGTCAACTTTAAGCAGAAACTAAAATGATGATATAATAATAATAATATAAAAATAAGAATTATTGAAGGTGTTATTATTAATAATATTAACCTTTACAAATATTAAAAAAAAAAAATAATAATAATAATAATACTTAATAATAATACTTTGTTAGTTTAATACTTTACAAACATTATTTTATTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU66079 True 1623 lncRNA 0.38 2 13123177 13124892

Neighbor

gene id symbol gene type direction distance location
CI01000009_12854692_12859028 NA coding upstream 262146 12854193 ~ 12861031 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 469320 12646484 ~ 12653857 (+)
CI01000009_12504532_12504815 NA coding upstream 618283 12504380 ~ 12504894 (+)
CI01000009_12432736_12435509 NA coding upstream 687286 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 732512 12385222 ~ 12390665 (+)
CI01000009_13194613_13197758 NA coding downstream 69545 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 267414 13392306 ~ 13476807 (+)
CI01000009_13549003_13580198 ITGA4 coding downstream 424111 13549003 ~ 13580233 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 571633 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 627532 13752424 ~ 13753823 (+)
G58004 NA non-coding upstream 61597 13041813 ~ 13061580 (+)
G58005 NA non-coding upstream 76002 13040326 ~ 13047175 (+)
G57739 NA non-coding upstream 196935 12923993 ~ 12926242 (+)
G57756 NA non-coding upstream 528432 12528533 ~ 12594745 (+)
G57911 NA non-coding upstream 641145 12481744 ~ 12482032 (+)
G58088 NA non-coding downstream 99948 13224840 ~ 13225681 (+)
G58103 NA non-coding downstream 121449 13246341 ~ 13248989 (+)
G58118 NA non-coding downstream 144514 13269406 ~ 13269639 (+)
G58153 NA non-coding downstream 210743 13335635 ~ 13335862 (+)
G58155 NA non-coding downstream 219288 13344180 ~ 13344479 (+)
G57701 NA other upstream 100039 13006643 ~ 13023138 (+)
G57691 NA other upstream 204712 12906444 ~ 12918465 (+)
G57682 NA other upstream 230838 12825469 ~ 12892339 (+)
G57811 NA other upstream 1187926 11933942 ~ 11935251 (+)
G58028 NA other downstream 15486 13140378 ~ 13143608 (+)
G58382 NA other downstream 908667 14039757 ~ 14039901 (+)
G58455 NA other downstream 1121803 14246695 ~ 14258526 (+)
G58558 NA other downstream 1372044 14496936 ~ 14501514 (+)
G58649 NA other downstream 1524832 14649724 ~ 14652022 (+)

Expression


Co-expression Network