G30588 (LOC107659282)


Basic Information

Item Value
gene id G30588
gene name LOC107659282
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64542115 ~ 64543421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41041
ATTAAGATAACATGTATAAAAACAGCGTGCAAAGTCTCTGTTCAGTAaagtgactcacacacacacagaggtgcATTCGAACTCTTGTTTCTTTTACTGGGTAACTCACATGAACTAACACATTGCTAATGCCACCTACAGGATGACTGATGTAACAACAGCTATAAGTTTAACAACTACATAACATTTCCTCCCACCTTACTGAAAAAGTACACATAAATGTTTCTTGATTAATTTACAGAACTAAACTAGAGGTCGGGAGTAGACTGTCCCTGGCCTCAAGCCAAATCAGGGGATTATTCTGCCCCTTTGCAGAAATGGCCCACTAGGATAACTACATACAGTCCATAGTTCTTTTCCTTTCAGTTTCTGTTCAGTTGTTCTATATGCAACACAAGTTAAAGTAAAAGTTCTACAGATTCAGGCGGTCAGGTGGTTTAGTAACTCGAACAGGGTAGCGCCTGGTTCTCTCTTTTGAAGAAATGGCATCCTGTGTATTCTGACCATTAGGTGGCATATCTCTGGACGTATGGTGGCTGTTTTCAGCTGCTGTAGACAAACTTGTCTCAGCAGACATGTGGACAGTTGAAGGTCCAGCGGACAGACTTGAAGATACAACTGTGTCTGATTCTGCAGATTGTCCTGGAGCAATCTGTCTCTGGTGAGGCAGAAGTTGATCAGCATGACGTCGCCAGGATTCTGTTGCACCTACATCCACTGTGTACGAAACTGGTCCACTTTGGGTTGTAACGACTCCTTTTGCCCATTTCTCTCCCCCTCTGTAATCCCAAGCCAACACAACATCACCAACTGCAAAATGTCTCAGTTTGGAACGAGAGGCTCTACGGAGGATCTGTGACTCCTGTGTGCGTCTCACAGCAGACTGAACACTTGGTTTCACAGCGTCCAGACGAGTGCGCAGTCGTCTGCCCAGAAAAAGCATGGCTGGAGACTCTTTAGTCGTTGAGTGTGGTGTGTTACGGTAGGTCAGGAGAAAGGCATCCAACCTCTGTTGGAGAGGGGTTGAGGAGTGCTTTGAGGACTTGCCCGTTAGTGGCTGGATGGTACGGAGCTGAGCGAATGTGCTTGACATGGTTAGCTTTTAGGAATGTGGCAAATTCCTGTGCCGTGAACTGAGGTCCATTATCGCTGACAAGGACTTCAGGAATTCCATAGCGGCTGAAAAGATTCCGCAAAACACGAATAGTCCTGTCTGTGGTTGTGGACTCCATAATCTGCACTTCTGGCCACTTCGAATGAGCATCAACCACAACCATGTACATGTGACCCTCAGTTGGTCCTGCAAA

Function

NR:

description
PREDICTED: uncharacterized protein K02A2.6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41041 True 1307 lncRNA 0.48 1 64542115 64543421

Neighbor

gene id symbol gene type direction distance location
LOC103022915 NA coding upstream 123672 64412269 ~ 64418443 (+)
tmem165 tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960 coding upstream 130414 64399672 ~ 64411701 (+)
srd5a3 NA coding upstream 144486 64394209 ~ 64397629 (+)
pdgfra pdgfra coding upstream 397791 64111719 ~ 64144324 (+)
LOC103022002 LOC103022002 coding upstream 437783 64102281 ~ 64104332 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding downstream 28949 64572370 ~ 64589618 (+)
chst14 chst14,LOC107665414 coding downstream 48236 64591657 ~ 64602638 (+)
kiaa1211 kiaa1211 coding downstream 85752 64629173 ~ 64673511 (+)
LOC103038194 NA coding downstream 151541 64694962 ~ 64702540 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding downstream 168752 64712173 ~ 64728301 (+)
G30587 NA non-coding upstream 11952 64529930 ~ 64530163 (+)
G30543 NA non-coding upstream 85683 64454774 ~ 64456432 (+)
G30540 NA non-coding upstream 116713 64423509 ~ 64425402 (+)
G30539 NA non-coding upstream 119220 64422501 ~ 64422895 (+)
G30517 NA non-coding upstream 235691 64306115 ~ 64306424 (+)
G30589 NA non-coding downstream 882 64544303 ~ 64546122 (+)
G30615 cep135 non-coding downstream 69539 64612960 ~ 64614108 (+)
G30617 cep135 non-coding downstream 72006 64615427 ~ 64622338 (+)
G30640 ppat,LOC106560282,LOC107683925 non-coding downstream 165902 64709323 ~ 64719038 (+)
G30646 NA non-coding downstream 177534 64720955 ~ 64832837 (+)
kit kit other upstream 272420 64231244 ~ 64269695 (+)
G30362 NA other upstream 1196422 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1610982 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1688827 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2606032 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 478998 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 534359 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 555081 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 555870 65099291 ~ 65099362 (+)
G31000 NA other downstream 1285360 65828781 ~ 65837365 (+)

Expression


Co-expression Network