G58301


Basic Information

Item Value
gene id G58301
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13745821 ~ 13748823 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66377
CTCATTTTCATTTAGTTTAACTACAATAACTAAAACTAAAACTGAAATAAAAATGAATAAAAACTATACACATAAAAAATTAAAAAGCAAAAACTTCTAAAAATTACAAAAAAATTATTAAAACTTTAACTAAAATTAAAATAAAAAAGAAAATATACAAAATAAAAACATACATTTATTACATTATTGTAATTTTTTATGATTACTTTTATTCTTCATCCTACTTATTTACATTTTATTTCTTTTTATTGTATGTGTATGTGTGTGTGTGTGCGTGTGCATGTGTGTACTCGCAACAAATTACGCATTACACTTAAATAAACCTCATCTCAGTCTGATTAATAGCTCAAAACAAACAAAAAGAATTCATCAAATCCATTGTGAATACTTAATAACTAATAATGTTTGTGCAAAATGATGTCACCTCCTGGAGGATTATGTAATTAATGGAACCTTTTTTGTTAGTAATACGGATTTACAAAAGATTAACAGGATGGGAAAAAAAAAATCTATAAACCGATTATCAATTAAAACAATTATTTCAACTTGTTTTGTTTGGAAAATAAAAGAAACATTTGGAAAATGTATAAATAAATCCCCAGTTTTTCATGTCAGAAGTTAGTGCATCCCCCAAGGACATGACACAAATAACAGTATCCACTCAATATTTAAATCTTTTGAACAAGAAAAAAAAAAGACTACATTACTGCATAGTAGGAATGCTCTGTCTATGCCATCTGTGTGTTTGAGCCACAGTACACTTACTTACTCAGCCATGCCATCTTCTCCATTAACATTCACACTACACATATTTCACCGATGGAGGCGGCGATTTGCATCCAATGACCCACACATGCAGCCCACTCAACAGACTACTCACACTGCTCGTGCTTATGGATCAGTCGCTAATATTAACACGGTTCCTCCGCTCTAAACCACATACACTCTCACATTCTGACAGCTCTAGTGAATATGTGTCTGTTTTGCAGTTTTTTTCCCAGCATGATTTGAGAATAATTCAAAGAGCATCTTGAGCTTCATTGGAAGCAATAACATCTGAGAGTCACAATGTCACAAATGTAATTATTTGATTAGTAGCCTAGAAATAGAGCAGCGTTTAAAATATTTCTTATTCAGAACATTTCCTTAATATTTTTAAATTTAAAAATCAAAAAAATTTATTTATTTCCAGGTTTAAATTAGATTCTAAATCTCAGATTTTCATTGTGGTCTCAGACTTTTCAACCATACTGTATATGAAGATATAATGATATATGATATAATAAGGCACTAAACTGCTTTTGACCATTCATAGTTCTTCATTAAAAAGCATTTTAATATGGAAAATGTGTCTTTTATAAGCAGTGACTTAAAGTAAAGACTTTCTTTTGCACAGGTCAGTGCATCTAGTAAACAGCTTTTCAGATTTGTCTTATTTTATTTCCATTTTTGCTTCTTCCTTATTTTCAGCTATATGATTTTATGGTAACACTTCACAATAAGGTCTCATTTGTTAACATTACTTAAGTTAAAGTGCCTCCATTATGCATTTTAAATGTTACAAATTTTGTTTTGGAGGTCTCCTACAGGCTAAAAAACAAAAAACAAAAAACACTTTAGTTTTCTAATAATATACATGTTAGCATCACCTCTTTTCTCACAGTGTCTGAAAGGGTTCGATAAAGGATCCAGTCTCTCTAACCCCTCCTTTCTACTTTGCTCTGATTGGTCAGATGACCCAGTCTGTTGTGATTGGTCTACCACTTACAGCATACTTTGGAAACTAAACGTCCCTTATCATATCTGAATTTTAGCTCTGGATCTTCCTCAGCACTTACTATACATGGTGATATGAACAGTAACGATGGCGTTGGTTTTAACATTTCAATTCGAGCCCTAGTCCTCTTCCTCATCCTTTGGAAGTGCATGCAAAGTGGATTTGCTTTTGCAGTGCAGAAATTGTTGTCTTTACAACATGTTGACAGCATGAACCAAACTCTTCCAGGCCTCTGCTACAACTACAGTATTTGAGAGGTCAATGTAGACGTTGTTCACAGGCAGCAAATGAAGCCCATAGGCGGGTATTATGCAAATCTGTTACAAACCTATGTAGTGAGACTGGAATTACTGACGACTCATTTCAGGCAGTTCAGGCGGTTCTTTCTTTTGGGATTNGATAAATAATGTAATGTATGTATTTAAATAATGTAATTAACTAATGTTAGCAAATTAATCCTTATTTGTAAAGTGATACCGATTTTATTTATGATTTATTTGTGGAGTTTATGCAGTATTTCAGTAAGCCAACAACTATGAATCGAAGATTGTGGCCATTCTGGATAATGTGGTTGTCACTCCTTAAACTTTGCAGTGTCTATGTGGCCACTGTTTCTTGTTTTTTTGAGGGGTTTCCACTTCAGTGAAAATGTGTCATCTTTCTTTAGACATATCTTTTTATTAGTACACATGCAATGCTAGGAGTAGAGTATATTTATTATTATAATTGTTTTAATCGAGGTGTAATGTTTTTCTTTTTGCCCAATTAATGGGGCAGTATAGTATGGAACCTTGTTTCTGCCATGAAATAAAAAAAAAGGTAATTGTGACTATTTATCTCACAATTCTGACTTTTTTTTCTTGCAGTTGCAAGTTTATATCTCACAATTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66377 True 2670 lncRNA 0.32 3 13745821 13748823

Neighbor

gene id symbol gene type direction distance location
CI01000009_13696525_13718933 SSFA2 coding upstream 26888 13696525 ~ 13718933 (+)
CI01000009_13549003_13580198 ITGA4 coding upstream 165588 13549003 ~ 13580233 (+)
CI01000009_13394582_13476351 UBE2E3 coding upstream 269014 13392306 ~ 13476807 (+)
CI01000009_13194613_13197758 NA coding upstream 546120 13194437 ~ 13199701 (+)
CI01000009_12854692_12859028 NA coding upstream 884790 12854193 ~ 12861031 (+)
CI01000009_13752424_13753460 NA coding downstream 3601 13752424 ~ 13753823 (+)
CI01000009_13798741_13799037 NA coding downstream 48061 13796884 ~ 13799191 (+)
CI01000009_13811227_13837798 NA coding downstream 62253 13811076 ~ 13838395 (+)
CI01000009_13884165_13939556 NCKAP1 coding downstream 135024 13883847 ~ 13939688 (+)
CI01000009_13942733_13946356 FRZB coding downstream 193698 13942521 ~ 13946405 (+)
G58307 NA non-coding upstream 99425 13637284 ~ 13646396 (+)
G58252 NA non-coding upstream 160565 13523613 ~ 13585256 (+)
G58205 NA non-coding upstream 359624 13385986 ~ 13386197 (+)
G58168 NA non-coding upstream 362717 13382604 ~ 13383104 (+)
G58179 NA non-coding upstream 387701 13357918 ~ 13358120 (+)
G58310 NA non-coding downstream 84718 13833541 ~ 13835879 (+)
G58389 NA non-coding downstream 226565 13975388 ~ 13978604 (+)
G58388 NA non-coding downstream 248002 13996825 ~ 14004082 (+)
G58384 NA non-coding downstream 263082 14011905 ~ 14018473 (+)
G58421 NA non-coding downstream 302154 14050977 ~ 14051404 (+)
G58028 NA other upstream 602213 13140378 ~ 13143608 (+)
G57701 NA other upstream 722683 13006643 ~ 13023138 (+)
G57691 NA other upstream 827356 12906444 ~ 12918465 (+)
G57682 NA other upstream 853482 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1309804 12432538 ~ 12436017 (+)
G58382 NA other downstream 284736 14039757 ~ 14039901 (+)
G58455 NA other downstream 497872 14246695 ~ 14258526 (+)
G58558 NA other downstream 748113 14496936 ~ 14501514 (+)
G58649 NA other downstream 900901 14649724 ~ 14652022 (+)
G58711 NA other downstream 1017836 14766659 ~ 14773773 (+)

Expression


Co-expression Network