Gene
RNA
| Item | Value |
|---|---|
| gene id | G58686 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 14720888 ~ 14721094 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU66826 | True | 207 | lncRNA | 0.42 | 1 | 14720888 | 14721094 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_14682045_14685381 | NA | coding | upstream | 35468 | 14681654 ~ 14685420 (+) |
| CI01000009_14659692_14664324 | NA | coding | upstream | 56555 | 14659179 ~ 14664333 (+) |
| CI01000009_14616605_14620028 | NA | coding | upstream | 100650 | 14615371 ~ 14620238 (+) |
| CI01000009_14595691_14611767 | NA | coding | upstream | 108319 | 14595436 ~ 14612569 (+) |
| CI01000009_14581261_14582899 | NA | coding | upstream | 137894 | 14580880 ~ 14582994 (+) |
| CI01000009_14857765_14859526 | NA | coding | downstream | 136619 | 14857713 ~ 14859636 (+) |
| CI01000009_14862429_14898325 | SLC4A3 | coding | downstream | 140638 | 14861732 ~ 14898549 (+) |
| CI01000009_14916323_14920716 | NA | coding | downstream | 195171 | 14916265 ~ 14920795 (+) |
| CI01000009_14925314_14952223 | NA | coding | downstream | 203527 | 14924621 ~ 14952571 (+) |
| CI01000009_14976078_14977321 | NA | coding | downstream | 254677 | 14975771 ~ 14977424 (+) |
| G58676 | NA | non-coding | upstream | 10748 | 14704479 ~ 14710140 (+) |
| G58572 | NA | non-coding | upstream | 44515 | 14610902 ~ 14676373 (+) |
| G58631 | NA | non-coding | upstream | 111547 | 14609006 ~ 14609341 (+) |
| G58630 | NA | non-coding | upstream | 112822 | 14607086 ~ 14608066 (+) |
| G58713 | NA | non-coding | downstream | 42728 | 14763822 ~ 14764679 (+) |
| G58695 | NA | non-coding | downstream | 54843 | 14775937 ~ 14777316 (+) |
| G58735 | NA | non-coding | downstream | 91922 | 14813016 ~ 14813280 (+) |
| G58736 | NA | non-coding | downstream | 92303 | 14813397 ~ 14813661 (+) |
| G58738 | NA | non-coding | downstream | 109869 | 14830963 ~ 14832195 (+) |
| G58649 | NA | other | upstream | 68866 | 14649724 ~ 14652022 (+) |
| G58558 | NA | other | upstream | 219374 | 14496936 ~ 14501514 (+) |
| G58455 | NA | other | upstream | 462362 | 14246695 ~ 14258526 (+) |
| G58382 | NA | other | upstream | 680987 | 14039757 ~ 14039901 (+) |
| G58028 | NA | other | upstream | 1577280 | 13140378 ~ 13143608 (+) |
| G58711 | NA | other | downstream | 45565 | 14766659 ~ 14773773 (+) |
| G60028 | NA | other | downstream | 630953 | 15352047 ~ 15376169 (+) |
| CI01000009_15708273_15712002 | METTL5 | other | downstream | 986898 | 15706460 ~ 15712005 (+) |
