CI01000010_00421834_00427873


Basic Information

Item Value
gene id CI01000010_00421834_00427873
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 421237 ~ 428143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00421834_00427873.mRNA
ATGTATTTGTGTCCTGATGAATGGTTTAGCCTATGTTTAGGGAAGGAATAAGGGGTACATTAGCCATACTGAAATGAAGAAATGAATCCCGTTAACAGTAATGTTAATGTTATGGATCGTTTTTAGGAACATAGTTAATTACACTGTTAATGATAATGCCATCTCTCCATCACTCTCCAGATAGAATACACTACTATAAGTGTAGTCAACGAGGTAATCGATGAACATTATGCGTTAATATAACTCCTGCAAATATAGTCGTTGCTGTAAATGTATTTTACGTTATGGGAGCAGCCCCTCTTCCCTCCAGTTAAACACAAAAACCGATTAATGCTGTATTTCCGCCACTCCCAAGAAAACAAAATGCTATTATATGCATCTAATACTTGCGTGTGTGGATGGGCGAAAGTAACATCAACCCATGGTCTTAAGGTACATCAAGGCCTGAAAACCACCAACCCAGGGCCCCGCATTGACCGGATTCTGTCAAAAAGAAGGTTAAATCAGTCAGGTGAAACTCAGCGGCAGGAAGAAACCCACAGTCCGCAGAGAATCAGCACCCCAGGGAATGAGGAGGAAGCGTCAGGCAGAACTACCAGTCCAAGACAACAACCAGCCCACCGCAAAAAAGAAAACATGCAAGGACGTAAGCCGTTGGTGAAATGGCCAAAGTCTAACAGCAAGGAGTGGGAAACCATCAATACAGACTTAAGCCTTATCCTAAGTAACGTCAAAGGATCAGCCGAGAAGAAGCTGGAGAAGATGGGCGACCTTATCTACAGTTACGGAGAGGAGAAATGTGGAGTGAAGGAGCAAGAGGCGACGGCTAAGAAAGTTGTGGAGAAAGGCGACAGCAGAAGGGGAGGCATTAACTTACTTCAAGAGGACCTAAAGCACAGGCTCTCAAAATTCCGCCGAGCAGAAAGCCTACGGATGCGCCGGAAGAAGAAAGAAAAAGTCAGAATTGATTTCTACAAAGACCCTTTTAAATTTGTGAGAGGCATATTCACAAAGGAGAAGAGTGGATCCCTGAAAACATCAAAAGACCAGGTAGAAGAGTATCTGAGAACTATCTATACTGATGAGAAAAAAGATGAACCGATCGTTGTCCCCACTGACATCCTTCCAATATCACCACCACAACATCAGTTTGAGATCAGCCCTCCCAAGCTGAGCGAGGTGAAGCAGGCAGTAAAAAAGGCAAAATCAGCATCTGCACCAGGCCCTAACGGCGTACCGTATAGTGTCTGCAAGAATGCTACAGATGTTTTGAAAATCCTGTGGAAAAACATGAAAGTGGCGTGGGACAAGCAAATCATCCCGAAAGCCTGGCAAAGAGCGAGAGGGTCATTTCTGTGGGTTGCCTTTGATTTCTTCCAATTGCCGACTACAATCACAAATCTAGTGAAACACTACTTCCAGGATCTACAGTTTTGCATTACAACGTCAGGCTTCACCACAAGTTGGCAACTGCTGGAGACTACTGGAAAACTTCATCAAAATATAACGTGGGCGAGGATGAAGTTAAAGCCCAGTAAGTGCCGAAGCATCTCCATCGTGAAAGGCCAAGTCACAGACCAAAGATTTCATGTCGGCAGAACACCTGTCCCAACTGTCTCAGAAATGCCAGTAAAGAGCTTGGGGAGATGGTATAATGCGAAGCTCAAAGATACCAAGCAGTTTAAACAACTAAAAAATGATACCAGCATGTACATGGAGCGCATCAACAAGACATTGTTGCCAGGAAAACTCAAGTTGTGGTGCTTTCAGTTTGGCATACTCCCAAGACTCTCGTGGCCTTTAACTGTGTATGAGATCACCATCACCAAGAGGACACAGTTATTCGAACAACGGCCCCCTGGGTGGAAGTGGAAGTGGAATTCATCAGAAGCTGTTCAGAGTGCAAAGTCTGCGCTTCAATTCAGAGATGTGGTTGGGCAAGTACAGCATGGGAGGGCAGGGTTCGGACTCATCCCAAAAACTCCTCTGTGGAACAAAGCAACATCAGTACAGAAGAGACAGCTAGTGGTAGAAGAAGTCAGGAGACAGGAGGAGGGAGAGCGACATGCCAAAGCTGTCTCAATGGCCAAGCAGGGGAGATGGACCAACTGGGAGGGCCTGGAGAAGAAAAAGCTCAGCTGGCGTGACATCTGGCAGATGGAGGGAGCGCGGCTGAGTTTTGTCATCAGAGCCACATACGACCTGCTACCCTCCCCCCAAAATATGAAAGAGTGGTATGGAGAAGATCCCGCCTGTTCCCTGTGTCAGGTACCTGCATCCCTAAGGCACATTCTATCAGGGCGTACTAAAAGTCTCAACCAAGGGCGCTACACTTGGCGGCATAACCAAGTACTCAGAGAGCTGGCATCAATACTGGAACAGAAGCGAACCACCATAAACAACCTCCCACAAACATTGGCAGGACAGGTCAAATTCACAAATTTCGTACCAACTGGCCAACATCAAGAGCATCATACAACACTTAAGGATGCCAGCATCCTGCAGCCAGCAAGGGATTGGAAATTGGAAGTGGACCTTGATAAGAAGCTTGTGTTTCCCCCAGAAATAGTGGCTACAACACTCTGGCCAGACATGGTCCTGTGGTCTCCAACAACAAAGCAGGCATATGTTGTGGAATTAACAGTACCATGGGAAGATGGGGTTGAAGAGGCTTATGAGAGGAAAAAGAACAAATATTCCGACCTGGCAGCTGAAGCATCCCAGAATGGCTGGAAGACCAGCATCTTCCCAGTAGAGGTGGGATGCAGGGGATTTGTTGCAACATCTACCACCAGTTTGTTGAGGAAAATAGGGGTGAAGGGTCGCTCTTTCCAACAGACCATCAAGTCCATGTCAGGTGCTGCCGAAAAAAGCAGTAACTGGCTCTGGATCAAGTGTAAGTACCCTATCTGGGCAGCTAGGTAGAGAGGGGGTGTACCTGGGACGCTGGGTACACCGTTGAGCCTTCTGGAGACGTTGTGGGCTTCAATCAACGAAACGTCGATGAAGCAGGGTGCCCACCTGATGACCCCAATGACATACTTTACCCCCTTTGTTGTTGTTTTTTTGTTGTTTTTTTTTCTCACCACTCCATACCGACTGCTACTATCAAGAGTTTTCTACTAAAGGGATTGAAACATTTAGTTCTATTAGCTTTACTACCAAGAGTCAATTTTAAATTCAGAAGTAAATTATAATATCTATTTATTTATGTTATATCATAATCTGCGCGACACCGTCGTTGACTTTCTTTGATGACGTTTGCAGAGTGTTCCAAATGAGTGATTATTGTCAGCGAAGTCCACTTCAACTGATATACCGTGCTCAGGGAGTAGGGAGCAGTAAACACTGTGTCGAATGGAACGCAGCTCATGTTAACTGGGGACACGCGCGAGCACACAGTTTTACCTGTATTTCTAGCAGATGTTAGACAGTGACAGATTCGTCACATGTGATATTCCACGGATCATAGATTTAAAAACGTATGTTTCACTAGTTGTATACATTGGTATACATAATAAA

Function

NR:

description
polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00421834_00427873.mRNA True 3522 mRNA 0.45 6 421237 428143

Neighbor

gene id symbol gene type direction distance location
CI01000010_00335493_00356496 CEP104 coding downstream 64741 335440 ~ 356496 (-)
CI01000010_00327845_00329442 CUNH1ORF174 coding downstream 91795 327227 ~ 329442 (-)
CI01000010_00154875_00293942 NPHP4 coding downstream 127295 154875 ~ 293942 (-)
CI01000010_00517865_00522058 NA coding upstream 89369 517512 ~ 522058 (-)
CI01000010_00524503_00527976 APEX2 coding upstream 96256 524399 ~ 527976 (-)
CI01000010_00532752_00544586 CSDE1 coding upstream 104474 532617 ~ 544586 (-)
CI01000010_00553512_00562038 NA coding upstream 125270 553413 ~ 562038 (-)
CI01000010_00601570_00615159 IQSEC2 coding upstream 173427 601570 ~ 615159 (-)
G61016 NA non-coding downstream 23853 397070 ~ 397384 (-)
G61013 NA non-coding downstream 34886 384872 ~ 386351 (-)
G60953 NA non-coding downstream 37256 382064 ~ 383981 (-)
G60958 NA non-coding downstream 54212 365887 ~ 367025 (-)
G61011 NA non-coding downstream 99034 320408 ~ 322203 (-)
G60952 NA non-coding upstream 11052 439195 ~ 439916 (-)
G60943 NA non-coding upstream 58239 486382 ~ 502688 (-)
G61035 NA non-coding upstream 136465 564608 ~ 564828 (-)
G61050 NA non-coding upstream 150526 578669 ~ 578948 (-)
G61051 NA non-coding upstream 150901 579044 ~ 579766 (-)
G61045 NA other upstream 144610 572753 ~ 575511 (-)
G61888 NA other upstream 816326 1244469 ~ 1246018 (-)
G61965 NA other upstream 996282 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 3101527 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3461926 3890069 ~ 3899058 (-)

Expression


Co-expression Network