G65342


Basic Information

Item Value
gene id G65342
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19746885 ~ 19749668 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88207
TCCTCCACAACAGCTAAAGATTATAGAGCTTCGCTTCTGATTCGCATCGAAACTGAATTCAGGCCGAACCTCGACCCGGTATCGGTCCGGATCCGGCACGGGACACAGGAGCGAAGAACCGCGACAGCTGGAGAAAGCGGGCGGGCTGGTGCGCGCTCTAGCGCAGCGTTGATTGTAAACACGGCGGGTAAACGGTGGGAATAGCGGGGCGGCAGCGCGCGGGCGGCCGTGGCAGGCCGAGCGGGTTAAAGAGCGCACGGGTGGACACTGACCTGCGCGAGTCCGCCGCGTGCACGAGCCGCCGTCTTCACTCTATCTCAACAATCCGCTCCTCAGGATCCGCGAGCGAGAGCCACATCACCAAACATCCCGGAAACCGAGGCGCAGCGCTGCGATTGGACCCGCCGACTCCTGCCGAGGGACCGTCCACAAAGTGCAGGCGCGCAGGAGAAACGAAGTTCATCGACTCACACCGTGCCCGGGTAGTTTCGGTTTCGCACTGCAGTCACACCCGAGACTCCGGACCACAGCCCACACCAAGaaagaagtggcagccaatcacacagagCGTACTCTCAATCGGAAACAACCGTCtgcctggaggactgcattgggGGACTCACCCAGAGCAGAGTAACCAGTTGACCTCATCTCCATATTTTTGGAATGTGGCATGAAACCAGAATTtgtggaggaaacccacacagacacaaggAGAACATGGAGGCTCCACCCAGATAAGAACTGGAACCCAGAACTTTTGAGAAATTCTGAGAGGCAAACCTGCTAATCACCAAGCCAGCATGCACCTTgaataacagcaaactcaagTTGCATTACTCAATACATTCAAAAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88207 True 859 lncRNA 0.56 2 19746885 19749668

Neighbor

gene id symbol gene type direction distance location
guca1a guca1a,LOC107590762,LOC107755893 coding downstream 8466 19732755 ~ 19738419 (-)
lhfpl3 lhfpl3 coding downstream 32442 19665559 ~ 19714443 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 231502 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 625425 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 1028255 18717502 ~ 18718630 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 304283 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 433426 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 452430 20202098 ~ 20205655 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 773187 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 1233484 20983152 ~ 21356508 (-)
G65339 NA non-coding downstream 74768 19669547 ~ 19672117 (-)
G65277 NA non-coding downstream 135007 19610935 ~ 19611878 (-)
G65276 NA non-coding downstream 136396 19609454 ~ 19610489 (-)
G65279 NA non-coding downstream 140384 19606290 ~ 19606501 (-)
G65273 NA non-coding downstream 153772 19592294 ~ 19593113 (-)
G65354 golgb1,LOC108279640 non-coding upstream 18514 19768182 ~ 19769869 (-)
G65359 LOC103037311 non-coding upstream 43115 19792783 ~ 19793144 (-)
G65363 NA non-coding upstream 54638 19804306 ~ 19805426 (-)
G65364 NA non-coding upstream 55852 19805520 ~ 19806601 (-)
G65375 NA non-coding upstream 163620 19913288 ~ 19913569 (-)
ndufb2 ndufb2 other downstream 141160 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 376177 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 462853 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 723227 18898185 ~ 19023658 (-)
LOC111192971 LOC108435850 other downstream 1096542 18638307 ~ 18650343 (-)
llph llph other upstream 45486 19795154 ~ 19799602 (-)
ost4 NA other upstream 1795750 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1880290 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2541017 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 3303605 23053273 ~ 23160179 (-)

Expression


Co-expression Network