G65354 (golgb1,LOC108279640)


Basic Information

Item Value
gene id G65354
gene name golgb1,LOC108279640
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19768182 ~ 19769869 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88227
GTGTCGCTCCTCCAACTGTTTGTACTGGCCCAGCACCCTGTCCCGATCATCCTGCAGGGATCCCATAGCCTTGGTGAATGAGTCCAGTCGGGCCTTGCTATGGCTGGCGTCCTCTTGAGCTTTATGAAGCCTCTCCTCAAGATCTCGCATGGCTGATCTTCTCTCCTCCAGCTGCTTCTCTGCCTCCTCTGCCCTGCCGTCTGCATCCTTCCTGGCTTCCTCAACAGCCTGAGTCAcagcttcttctttctctccaaGGAGATCCACTTCCCTCTTCTCCTTCTCAGCCAGCTCAGCCTGAAGTATTTCTGTAAGATTCTTACATAAACGCAAATCTGTTTCCAGTTGCTCCAGACTCAAACACATCCTCCTCTCCTCAGTTTCCCTCTCCTTGATTTCAGCTCTTGCCTGGTTGGCTTCACCCTGAAGTTTGCCTACTGCTTCTTCCAGGGCTTTAGCTCTGTGAcgtagtccttctgtttctgctTCCAGAGAGTCACACTGGGAGCGTGTCTGAGCAAGGGAGCTTTCTGTCTGAGTCAGTCTCTCTTGCAATtcagctctttctttctccagaGCAGCAAGAGATTCACTGTGCTTCTTTTCTGCCTCACTCATCTCAAGCTGCCATTGTTGCTC

Function

symbol description
golgb1 Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in cis-Golgi network and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in axis; floor plate; hypochord; otic placode; and polster. Used to study hyperphosphatemic familial tumoral calcinosis. Orthologous to human GOLGB1 (golgin B1).

NR:

description
PREDICTED: golgin subfamily B member 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88227 True 639 lncRNA 0.51 2 19768182 19769869

Neighbor

gene id symbol gene type direction distance location
guca1a guca1a,LOC107590762,LOC107755893 coding downstream 29763 19732755 ~ 19738419 (-)
lhfpl3 lhfpl3 coding downstream 53739 19665559 ~ 19714443 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 252799 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 646722 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 1049552 18717502 ~ 18718630 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 284082 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 413225 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 432229 20202098 ~ 20205655 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 752986 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 1213283 20983152 ~ 21356508 (-)
G65342 NA non-coding downstream 18514 19746885 ~ 19749668 (-)
G65339 NA non-coding downstream 96065 19669547 ~ 19672117 (-)
G65277 NA non-coding downstream 156304 19610935 ~ 19611878 (-)
G65276 NA non-coding downstream 157693 19609454 ~ 19610489 (-)
G65279 NA non-coding downstream 161681 19606290 ~ 19606501 (-)
G65359 LOC103037311 non-coding upstream 22914 19792783 ~ 19793144 (-)
G65363 NA non-coding upstream 34437 19804306 ~ 19805426 (-)
G65364 NA non-coding upstream 35651 19805520 ~ 19806601 (-)
G65375 NA non-coding upstream 143419 19913288 ~ 19913569 (-)
G65407 NA non-coding upstream 393414 20163283 ~ 20163492 (-)
ndufb2 ndufb2 other downstream 162457 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 397474 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 484150 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 744524 18898185 ~ 19023658 (-)
LOC111192971 LOC108435850 other downstream 1117839 18638307 ~ 18650343 (-)
llph llph other upstream 25285 19795154 ~ 19799602 (-)
ost4 NA other upstream 1775549 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1860089 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2520816 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 3283404 23053273 ~ 23160179 (-)

Expression


Co-expression Network