G65963


Basic Information

Item Value
gene id G65963
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21964958 ~ 21965696 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU89008
aaaaaaaaaaaaatgccccttcatgatttcttattttgtacatgtttgttcataaatgttttaaacaaatgtACATATAATTCAAatacaacacaggtaaacacaaaatgcagtttttaaataaaggtttaattgttaagggacaaaaaaaatccacaccTGCATGGCCCTGTGtggaaaaagtgttaaaaaaaaatacagtggaaCAGTGGAGAACCTTTCCAGAAGTGGCCGACAAATTAGCACAAGAGTGCAGCGACAAAAGACCCCttaacaacatccaaagaactgcaggccttaCTTTTCTTCAGAAAaacatcatacctacagtaaaacatggtgggggTACTGTGATCAATGGAACCTTGAATTCTGCTGTCCACCAAAAAGTTCTAAAGGAGAATGTCCAGCCATCATGCCCTTaagctgaaatgaacttggAATCATGAAAGACTCATTGTAAATGATTGAAAATGCTTGATTGGAGTTAACCAGTTATTAGGTTAGgtagggcaaacactttttcacacagtcatgtagttttttttattctccctttattataaaaacctgcattttgtgtttacgtGTGTtgtctataaaaaatatttcaattagtctgatgatctaaaacatttaaaaggcaaacatgcaaaaaaaaaaaaatcatgaagcGGGCAAACACTTTTATATATAGCACAGGAAATGTTCTGATGGTGGTTAAAAACACAACCTCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89008 True 739 lncRNA 0.34 1 21964958 21965696

Neighbor

gene id symbol gene type direction distance location
LOC103040407 NA coding downstream 87256 21823896 ~ 21877702 (-)
mrps10 NA coding downstream 146810 21809285 ~ 21818148 (-)
LOC103044186 NA coding downstream 578499 21374232 ~ 21386459 (-)
nav3 nav3 coding downstream 608450 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 1154247 20522855 ~ 20810711 (-)
LOC103040999 LOC103040999 coding upstream 281 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 23559 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 283191 22248887 ~ 22273098 (-)
LOC103043373 LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953 coding upstream 339509 22305205 ~ 22352523 (-)
pde3a pde3a,LOC107707962 coding upstream 397458 22363154 ~ 22401341 (-)
G65950 NA non-coding downstream 3852 21959297 ~ 21961106 (-)
G65949 NA non-coding downstream 6040 21957494 ~ 21958918 (-)
G65948 rab21,zgc:154045,LOC106609839,LOC107690748,LOC107687573 non-coding downstream 8689 21932824 ~ 21956269 (-)
G65962 NA non-coding downstream 11007 21952379 ~ 21953951 (-)
G65935 NA non-coding downstream 36825 21899171 ~ 21928133 (-)
G66004 NA non-coding upstream 165392 22131088 ~ 22131593 (-)
G66022 NA non-coding upstream 195975 22161671 ~ 22162400 (-)
G66052 NA non-coding upstream 313401 22279097 ~ 22279414 (-)
G66080 bcap29 non-coding upstream 327401 22293097 ~ 22298282 (-)
G66074 NA non-coding upstream 333785 22299481 ~ 22361569 (-)
G65803 gen1 other downstream 280130 21629958 ~ 21684828 (-)
ost4 NA other downstream 390759 21545418 ~ 21574199 (-)
llph llph other downstream 2165356 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2359233 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2594250 19305987 ~ 19370708 (-)
G66081 bcap29 other upstream 324989 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1087577 23053273 ~ 23160179 (-)
G66619 NA other upstream 2542138 24507834 ~ 24508281 (-)
G66642 NA other upstream 2694328 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3550819 25516515 ~ 25530980 (-)

Expression


Co-expression Network