LOC103043373 (LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953)


Basic Information

Item Value
gene id LOC103043373
gene name LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22305205 ~ 22352523 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238161.3
ATCTCTCTTTCATTTCGTCGCACTGGAAAACAGGATCTAAATATTCTGGATCCACTAGCCCCCAGCCTCCTCCCTACCCCCCTTCACAGCCATCACGTGTTTCAGCCAATTCAACCAGCCGCTTGCTGAAACGCTGGAAGCACTTTCTGGAGAAGGTTGTGAAAACCTGCGAGATTGACGTCAAAGATTACACTATTCAAAACACTGCGAACTGACCTGAAACGGAAAGAACTGGATCCGACTCGAACCATGACGAATTAACTCCCGACTCCAAGTGTCTTTCGCCTGCAACCCTATGGGAAGTTTGTGCGACATCCGCGGCGCGCGCAGCGGTGCTGTCCATACGAGCTCATCCTCATCATCCTGAGCTGTTGGGAATACGCTCCATAcatatctttatattatataacggCCCAGAATCGGTAAAGGAAACATCCGACAGAGAGGAACACGCAGCATTTATCGGAGCGAGGATTTGTGgAGTACATCCATCAATGGCAAGAAATTTCATTAGAGAAACCTTAGCCAAGGAAAATGAAACGTTTTTAAGGAGGATGGAAATACCAAACAAGGACAGCTGGTCGCCTGAAAATGGGCCTACGTCAGTGAGACGGCACCCTTTCTGTTCCAGTCTAAAGATGTTCCTTGTAGCCTTGTCCTTTGCCTACTTTTCGAAGGCTTTATCTGGAAGCTATATGAAAagcacaataactcagctggaGAGGCGCTTTGACATCCCCAGTTACTTAATAGGAGTCATTGATGGAAGCTTTGAAATAGGTAACTTGTTGGTTATCGCCTTTGTCAGTTACTTTGGTGCCAAGCTTCACCGACCAAAGATCATTGCCTTGGGCTGTCTGCTGATGTCATTAGGGACATTCTTAATAGCACTCCCTCATTTTATTATTGGAAGATACAAGTTTGAAACATCAGTGAGATCGTCAGCGAACTCAACAAACAACCTCACTTTATGTCCAACCAGTGTGCTTGTGGGTAATCATTCCTCTACACTTTCAAGCACAGGCTGTGAGAATGAGTCCAGGTTATCCATGTGGATCTATGTGTTACTGGGAAACATCCTCCGTGGGATTGGTGAGACCCCAGTACAGCCTTTGGGAATTTCTTATATAGATGATCATGCTCTGGAGGACAATGCAGCGTTCTACATTGGGTGTGTTCAGACGATATCGGTCATAGGTCCAGTGTTTGGTTATCTGCTTGGATCCCTTTGTGCAAAGATATATGTGGACATTGGATTTGTAAACATGGagagcattagcattacaccAGGAGATGCACGCTGGGTAGGAGCGTGGTGGTTGGGATACCTTATAGCAGGGCTCATCACCCTCATATCAGCCGTGCCCTTCTGGTTCTTTCCCAAGTCCCTGCCCGTGCCAGAGGGACGACTGGCCAAGTGCTCTCCTGAGCGGACCAGCTTCATCAAGGACTCTCCTGGACTGGACCACAAGTATCAGGCAGATGAACAATTCAGTTTCGTAAGACTGGCCAAAGagtttTTGCCAACACTGAGATCTCTCCTGGGGAATCCAGTCTACGTTTTATACCTCTGTGTTACTGTCATCCAGTTTAATTCTTTGATAGGAATGGTGAcatacaaaccaaaatacataGAACAACACTATGGACAGTCAGCATCCAAAGCTAACTTCTTAATGGGGGTAATCAACATCCCAGCTGTTGCATTGGGAATGTTCTCAGGGGGTGTGCTTATGAAGAAGCTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCACTAGGAACATCTCTGTTGGGCTACTTTCTGTCTTTGTTCTTCTTTGCCATGGGTTGTGAGAATGCCAAAGTGGCTGGCATCACTGTGTCATATGAAGGAATGGAGAGTCTCTCTCATCAGAACAGCACACTCTTTGTGAAGTGTAATGCACACTGTGAGTGCTCAAAAACAGAATGGGACCCAGTGTGTGGTGAGAATGGGCTCACATATGTCTCACCATGCCTGGCTGGGTGCCGGATGTCTCGTGGCTCTGGAGTAGACACAGTGTTTGAGCAGTGTAACTGCGTGGCAGGAGGAAACCTAACAGCCTACGTGGGTCActgcagacacagagagagctgCCAGAGAGTCTTCCCCTACTTCTTAGCTCTGTGTGTCATCACTTCCTTTATTATCTCCCTGGGTGGAACACCAGGATACATGCTACTCATCCGATGCATCAGGCCACAGCTGAAGTCTTTAGCTTTAGGATTTCACACCCTGACAACACGCACTCTCGCTGGCATCCCAGCTCCGATCTACTTTGGGGCAATCATTGACACTGCCTGTCTAAAATGGGGCCATAAGAAGTGTGGTGGAAAAGGAGCGTGTAGAATCTACAACACAACTGCCTACAGGATAGCATATCTGGGCTTAACACTGGGCCTGAGGACAGCCTCCTTCTTCCTGTGCGCTCTGGGTCTGGTGGTCTTACAGCGGCACATCAAAAGGCAGGAGAACGGCACACTTTCTAACGGCAACACTGGACACACTGTTGCAGAACTGCAAGCACTTAGAAAAGAGGAAACCCATAACTCACACTCAGACCAGTCCCCACGGACCTCAGACTATGACCCTGAGCGGGAGACGCGCCTGTGACACTCACAGATCTAAGCGGTCATGCAGGGAACCATCAGGCTGaatttatgttgtgtttttttgttgttgttttttcctaGAGTATAAAACTATTTCTATCAGATTATATAAAAGATCAGAAATTTGTTGTTTTGACATTGAAAATAACTATtgaatgtaaataatgttttatgaaaaacaaacaaacaaaaaatgtagcAAAATACTTTTGGTGGGTGGAGGGAGGTGATGGATTTTATAagcaagtgtattttttttatttgattgtggTTAATTGCAGGTATCATTACTTTTTAATGCAAAGTGAGACTCTTGTTTTATGTCTGTATTTTCTTAAACACTAAATCTACTATACTGCCATATGAGTGCAGTATTTAGATGGTGGATTAAATACCTGTAACTGAGCCTGCTATTAA
>XM_022671529.1
GCTCCTCACTCATCTCTCTTTCATTTCGTCGCACTGGAAAACAGGATCTAAATATTCTGGATCCACTAGCCCCCAGCCTCCTCCCTACCCCCCTTCACAGCCATCACGTGTTTCAGCCAATTCAACCAGCCGCTTGCTGAAACGCTGGAAGCACTTTCTGGAGAAGGTTGTGAAAACCTGCGAGATTGACGTCAAAGATTACACTATTCAAAACACTGCGAACTGACCTGAAACGGAAAGAACTGGATCCGACTCGAACCATGACGAATTAACTCCCGACTCCAAGTGTCTTTCGCCTGCAACCCTATGGGAAGTTTGTGCGACATCCGCGGCGCGCGCAGCGGTGCTGTCCATACGAGCTCATCCTCATCATCCTGAGCTGTTGGGAATACGCTCCATAcatatctttatattatataacggCCCAGAATCGGTAAAGGAAACATCCGACAGAGAGGAACACGCAGCATTTATCGGAGCGAGGATTTGTGgAGTACATCCATCAATGGCAAGAAATTTCATTAGAGAAACCTTAGCCAAGGAAAATGAAACGTTTTTAAGGAGGATGGAAATACCAAACAAGGACAGCTGGTCGCCTGAAAATGGGCCTACGTCAGTGAGACGGCACCCTTTCTGTTCCAGTCTAAAGATGTTCCTTGTAGCCTTGTCCTTTGCCTACTTTTCGAAGGCTTTATCTGGAAGCTATATGAAAagcacaataactcagctggaGAGGCGCTTTGACATCCCCAGTTACTTAATAGGAGTCATTGATGGAAGCTTTGAAATAGGTAACTTGTTGGTTATCGCCTTTGTCAGTTACTTTGGTGCCAAGCTTCACCGACCAAAGATCATTGCCTTGGGCTGTCTGCTGATGTCATTAGGGACATTCTTAATAGCACTCCCTCATTTTATTATTGGAAGATACAAGTTTGAAACATCAGTGAGATCGTCAGCGAACTCAACAAACAACCTCACTTTATGTCCAACCAGTGTGCTTGTGGGTAATCATTCCTCTACACTTTCAAGCACAGGCTGTGAGAATGAGTCCAGGTTATCCATGTGGATCTATGTGTTACTGGGAAACATCCTCCGTGGGATTGGTGAGACCCCAGTACAGCCTTTGGGAATTTCTTATATAGATGATCATGCTCTGGAGGACAATGCAGCGTTCTACATTGGGTGTGTTCAGACGATATCGGTCATAGGTCCAGTGTTTGGTTATCTGCTTGGATCCCTTTGTGCAAAGATATATGTGGACATTGGATTTGTAAACATGGagagcattagcattacaccAGGAGATGCACGCTGGGTAGGAGCGTGGTGGTTGGGATACCTTATAGCAGGGCTCATCACCCTCATATCAGCCGTGCCCTTCTGGTTCTTTCCCAAGTCCCTGCCCGTGCCAGAGGGACGACTGGCCAAGTGCTCTCCTGAGCGGACCAGCTTCATCAAGGACTCTCCTGGACTGGACCACAAGTATCAGGCAGATGAACAATTCAGTTTCGTAAGACTGGCCAAAGagtttTTGCCAACACTGAGATCTCTCCTGGGGAATCCAGTCTACGTTTTATACCTCTGTGTTACTGTCATCCAGTTTAATTCTTTGATAGGAATGGTGAcatacaaaccaaaatacataGAACAACACTATGGACAGTCAGCATCCAAAGCTAACTTCTTAATGGGGGTAATCAACATCCCAGCTGTTGCATTGGGAATGTTCTCAGGGGGTGTGCTTATGAAGAAGCTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCACTAGGAACATCTCTGTTGGGCTACTTTCTGTCTTTGTTCTTCTTTGCCATGGGTTGTGAGAATGCCAAAGTGGCTGGCATCACTGTGTCATATGAAGGAATGGAGAGTCTCTCTCATCAGAACAGCACACTCTTTGTGAAGTGTAATGCACACTGTGAGTGCTCAAAAACAGAATGGGACCCAGTGTGTGGTGAGAATGGGCTCACATATGTCTCACCATGCCTGGCTGGGTGCCGGATGTCTCGTGGCTCTGGAGTAGACACAGTGTTTGAGCAGTGTAACTGCGTGGCAGGAGGAAACCTAACAGCCTACGTGGGTCActgcagacacagagagagctgCCAGAGAGTCTTCCCCTACTTCTTAGCTCTGTGTGTCATCACTTCCTTTATTATCTCCCTGGGTGGAACACCAGGATACATGCTACTCATCCGATGCATCAGGCCACAGCTGAAGTCTTTAGCTTTAGGATTTCACACCCTGACAACACGCACTCTCGCCATGCTTGCAAATCTGCCATTTAACAGCTGGCATCCCAGCTCCGATCTACTTTGGGGCAATCATTGACACTGCCTGTCTAAAATGGGGCCATAAGAAGTGTGGTGGAAAAGGAGCGTGTAGAATCTACAACACAACTGCCTACA

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238161.3 True 3052 mRNA 0.45 15 22305205 22352512
XM_022671529.1 False 2433 mRNA 0.47 14 22315483 22352523

Neighbor

gene id symbol gene type direction distance location
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding downstream 32107 22248887 ~ 22273098 (-)
LOC111192879 NA coding downstream 315135 21989255 ~ 21990070 (-)
LOC103040999 LOC103040999 coding downstream 334563 21965977 ~ 21970642 (-)
LOC103040407 NA coding downstream 427503 21823896 ~ 21877702 (-)
mrps10 NA coding downstream 487057 21809285 ~ 21818148 (-)
pde3a pde3a,LOC107707962 coding upstream 10631 22363154 ~ 22401341 (-)
ada2 cecr1,LOC108442796 coding upstream 558664 22911187 ~ 22930186 (-)
LOC103026244 atp6v1e1b,atp6v1e1,LOC103026244,LOC108442797,LOC107658907,LOC107583987,LOC100708725 coding upstream 577699 22930222 ~ 22937099 (-)
LOC103031542 LOC103031542,LOC108443062,LOC108279885 coding upstream 596974 22949497 ~ 22991675 (-)
gpr19 gpr19,LOC107707975,LOC107658992,LOC107710070,LOC107662212 coding upstream 786746 23139269 ~ 23153974 (-)
G66080 bcap29 non-coding downstream 6923 22293097 ~ 22298282 (-)
G66052 NA non-coding downstream 25791 22279097 ~ 22279414 (-)
G66022 NA non-coding downstream 142805 22161671 ~ 22162400 (-)
G66004 NA non-coding downstream 173612 22131088 ~ 22131593 (-)
G65963 NA non-coding downstream 339509 21964958 ~ 21965696 (-)
G66113 NA non-coding upstream 55016 22407539 ~ 22407750 (-)
G66159 NA non-coding upstream 587046 22939569 ~ 22949141 (-)
G66167 cunh11orf98,c19h11orf98 non-coding upstream 647509 23000032 ~ 23003466 (-)
G66287 NA non-coding upstream 1043223 23395746 ~ 23397609 (-)
G66288 NA non-coding upstream 1045903 23398426 ~ 23399499 (-)
G66081 bcap29 other downstream 13523 22290685 ~ 22291682 (-)
G65803 gen1 other downstream 620377 21629958 ~ 21684828 (-)
ost4 NA other downstream 731006 21545418 ~ 21574199 (-)
llph llph other downstream 2505603 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2699480 19600214 ~ 19605725 (-)
dusp16 dusp16 other upstream 700750 23053273 ~ 23160179 (-)
G66619 NA other upstream 2155311 24507834 ~ 24508281 (-)
G66642 NA other upstream 2307501 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3163992 25516515 ~ 25530980 (-)
tmem258 NA other upstream 5680178 28032701 ~ 28035961 (-)

Expression


Co-expression Network