otop2 (otop2)


Basic Information

Item Value
gene id otop2
gene name otop2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17860217 ~ 17879272 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671418.1
TGGAGAAAATATTCCCATCACTAGAGGAGCAGCGAGAGACACTGCTGTAGGTAAACTAACAGTAAAGAGATCAGAAGTCTGGTAGAGGTTGTATCAGGTACAGTACTGTGGACGTCTCCTGCAGACTGGTCTCACCATGAGTCAGGACGGTCACTCCGGCGTAGCATCCGGTATGAATCAAGAAACACACGCCAGCATACTGTCCAGCCTCTACGGCATGGAAATAGAGACGGGGAAGAAGGACGAGGCGGATGGAGTCCAATACATCTCCACCATCCACTCCCCGTACCGCGGGCAGCGCTCCGCCAGCGTGGCACTGTCCTCCATCAGCACCTGGAGGGACCGGGCGGGCAGCTGGGGCTGGGTACTCTCCGCCTTCATCCTCATCAACGTGCTGATCCTGGGCAGCGCCTTCGTCAGCGGGAGCGTCTTCAACGGCGTCCACgtcaccaacacacacctgcagATCTTCCTCCTCGTCATCATCGTCCCCACCACCGTCTGGATGCTCTTCTACAAGGCCTACACCTGCCGCGGGGAGGAGGCCGTGCTCTACAAGGACGTGCACGCTGGACCCGTGTGGCTCAGAGGTGGTCTGGTGCTGTTTGGGGTCTGCAGCTTAATTATGGACGTTTTTAAAATTGCCTACTATGTGGGTTATACACACTGCCAGTCTCCGGTAAAGATCGTCTTCCCTGTGGTGCAGGCTGTCTTTATACTGGTGCagACATACTTTCTCTGGCTTCATGCAAAGGACTGTGTTCAGGTTCAGAGGAACGTAACTCGCTGTGGGCTGATGCTCACTCTGGCTACTAATCTGATGCTGTGGATGACGGCGGTTACAGAAGAGTCGCTGCATCAGACGGTTTATCCTGACGGCACCAATCAGACCTCCCGAACTCTTCTGCTCAGAGcggCGGCGTCTGACGGCGACAGCAGCTGCCAGTGTAGCCACACCTCCTGCAGCATCTTCGAGCAAGCCTACTACTACCTGTACCCCTTCAACATCGAGTACAGCCTGTTCGCCTCAGCCATGACCTACGTGATGTGGAGGAACGTGGGTCGGCTGGTGGACGATCACCCCGCCCACGAGCACCGCTTCCACCTGCGAGACGTCCTGCTGGGGCCGGCTGGCGGCCTGGTGGTGCTGGTGGCCGGTCTGGCCACTTTCGTCGTCTATGAGGTGGACGTGTCTTCAGGAGACCAGGAGAAGCGAGACACGGCGCTGACCTTGTACTACATAACCAACACGGTGACCATCGCTCTGATGACCATGGTCACGGTGGCCGGATGCGTGATCTACCGGCTGGAGCGGCGTGAACACGCCTCGGGGAAGAACCCCACCCGCAGTCTGGACATGGGGCTGCTGGTGGGCTCCTCCATGGGTCAGTTCACGGTCTCCTACTTCACCGTCGTCGCAGTACTGGGCACCGGAGTGGACGGCCACGTCAACGCCCTCAACCTGGCGTGGTCGGTGATAACCCTGCTGGAGCTCTGCGTGCAGAACGTCTTCATCATCGAGGGAATCCGGCGCGAGCCTCACCACGACGTGCGCCGGGCGAGCATCTTCTCCAACCTGCTGGCCCTCCACGCGCAGGAGGACCGGCGATCCAGCCACGTCCCCACGTCCCCCCGCGGCTCCATCGCCATCCCCGTCCACAAACCCCTGCCCTGGAAGAGGAAGATCCTGAAGGAGATCGCCGCCTTCCTGCTGCTGTCCAACATCATCcttTGGATCATGCCAGCGTTCGGGGCGCGCCCGCAGTTCGACAACCCCATCGGAACAGAGTTCTACCAGTTTAACATGTGGGTTGCCGTGGTGAACGTCGGGTTGCCGTTTTCGATCTTCTACAGGATGCACTCAGTAGCCAGTCTGTTCGAGGTGTACCTCACCTCATGAACCCACAGCATGGAGATCTGTTTTATAGTGAACACAGTGGagaaatagtttataaatggattattatttttatagtattttgttttgcatttgtttcttttgtgtttctttgtcttttatACTCGGCACCTGAATGAACTGCTGCacagttgtgtttgtgtgtgtgtgtgtgtactgtatgtttgtgtgtgtgtatatatctatatgtaCTTTTTATACAGATTGATTATGTACAgcttaaaatattgtatgtaattattattattattattatttgcacaaatatgtTGACAGATGAAGCTTTTGCCCTCATTGTGTTTGAGGGAATTGGCTATTATAAGCaacatgaaat

Function

symbol description
otop2 Predicted to enable proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OTOP2 (otopetrin 2).

NR:

description
PREDICTED: otopetrin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671418.1 True 2252 mRNA 0.54 8 17860217 17879272

Neighbor

gene id symbol gene type direction distance location
amn NA coding upstream 54391 17804284 ~ 17805826 (+)
LOC111192968 NA coding upstream 79625 17768928 ~ 17780592 (+)
LOC111192970 LOC108437139 coding upstream 96096 17748628 ~ 17764121 (+)
LOC107197389 NA coding upstream 114444 17732094 ~ 17745773 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding upstream 140359 17707970 ~ 17719858 (+)
LOC111192979 NA coding downstream 45074 17924346 ~ 17929849 (+)
LOC103040205 NA coding downstream 105693 17984965 ~ 18132010 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding downstream 281800 18161072 ~ 18172237 (+)
LOC107197388 NA coding downstream 296955 18176227 ~ 18193170 (+)
LOC111192978 NA coding downstream 317483 18196755 ~ 18213076 (+)
G64710 NA non-coding upstream 44489 17769247 ~ 17815728 (+)
G64709 NA non-coding upstream 44568 17780682 ~ 17815649 (+)
G64595 NA non-coding upstream 181775 17677928 ~ 17678442 (+)
G64586 NA non-coding upstream 186056 17622861 ~ 17674161 (+)
G64579 NA non-coding upstream 237545 17565712 ~ 17622672 (+)
G64753 NA non-coding downstream 78341 17957613 ~ 18008671 (+)
G64754 NA non-coding downstream 93307 17972579 ~ 18061330 (+)
G64760 NA non-coding downstream 120103 17999375 ~ 18000064 (+)
G64763 NA non-coding downstream 127882 18007154 ~ 18008138 (+)
G64764 NA non-coding downstream 133209 18012481 ~ 18348193 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 140305 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 972022 16833290 ~ 16888195 (+)
G64449 NA other upstream 984276 16873087 ~ 16875941 (+)
G64431 NA other upstream 1106657 16753043 ~ 16753560 (+)
G64289 NA other upstream 1417768 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 676856 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1343937 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1397530 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1401020 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1901391 19780663 ~ 19794325 (+)

Expression


Co-expression Network