CI01000010_03890095_03899058 (SSBP3B, SSBP3, SSBP2)


Basic Information

Item Value
gene id CI01000010_03890095_03899058
gene name SSBP3B, SSBP3, SSBP2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3890069 ~ 3899058 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_03890095_03899058.mRNA
GTTAGCTTTGTATGTTTATGAGTATTTGTTACACATTGGTGCTCAGAAGTCTGCGCAGACTTTCCTGTCAGAAATCCGATGGGAAAAGAACATCACGCTGGGAGACCCTCCTGGGTTCCTGCATTCCTGGTGGTGTGTCTTTTGGGACCTCTACTGTGCAGCTCCTGAGAGGAGAGACACATGTGAACATTCAAGCGAGGCCAAGGCTTTCCATGACTATGTGAGTATACGAAAACGTATGCAGATTCGAGGACAAAATTGCATTTCTTGTGCCTGTGACTTTGGAAGAGTCTCTGTGTTGTATAATAAGAAAATGTGTACAATGACCTGTGTAAAGGATGTAGTAATCATCCCTACAATAGCAATGATGTCAGCAGGGTTTTCTATGGAATCATCACTGTTTCTAGACGAAGATGCCATGTGCCTTGGACATGATGTTTGGCTGATTGGAAATCAAGAGGGTGGGGGAGGAGGCTGCGCCCTCTTTAAACAGTGGCCATGTTGTCTTCATGCTGTGTCAAGGGAAACACTCCCCCTCGGGCTGCGGTGGGGATGGAGAGTGATTGATGGCTGTCATGGAGCCTGTCGAGTGCCGCAGCAGCCCCCAGTCCTGTTCTTGGGAACATGCCACCAGGAGATGGCATGCCAGGTGGACCCATGCCCCCTGGATTCTTCCAGCTGTTCAGCCACCATTCACTTGGGCCCTCCCGGCTCCCAGGCCTCCCCTCACGCTCCTCCTCCCCCTAACAGCATGATGGGACCCCACGGCCAGCCTTTCATGTCACCTCGCTTTGGTGGGGGTCCAAGACCCCCCATCAGAATGGGCAACCAGCCCCCCGGTGGAGTTCCAACTGCCCAGCCAATGCTCCCAAACATGGATCCCAGACTACAGGGGCCGATGCAGAGGATGAATGTTCCTAGAGGAATGGGACCCATGGGCCCCGGCCCTCAGAGTTTTGGAGGAGGGATGAGACCACCACACAACTCAATGGGCCCTGGCATGCCAGGAGTGAATATGGGCCCTGGAAATGGCAGACCACCATGGCCAAATCCAAATGCCAACAATATGCCATATTCATCACCATCTCCTGGTGCATACGGGGGTCCACAAGGAGGGGGGCCTCCGGGAACACCTGGAATTGTTCCTAGTCCAGCAGACTCCAACAATTCCAGTGAAAACCTGTACACCATGATAAACTCAGGAGGTGGAGGGCGCAACAGCTTTCCCATAGGCCCAGGCTCTGAGGGACCCCTAGGGGCCATGGCAGGAATGGACCCGATGCATATGAATGGAG

Function

symbol description
ssbp3b Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in immature eye and nervous system. Orthologous to human SSBP3 (single stranded DNA binding protein 3).
ssbp2 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2).
ssbp3 Predicted to enable single-stranded DNA binding activity and transcription coactivator activity. Predicted to be involved in head development and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within hematopoietic progenitor cell differentiation and mesendoderm development. Predicted to be part of protein-containing complex. Predicted to be active in nucleus.

GO:

id name namespace
GO:0008284 positive regulation of cell population proliferation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_03890095_03899058.mRNA False 1295 mRNA 0.53 15 3890095 3899058

Neighbor

gene id symbol gene type direction distance location
CI01000010_03787388_03880750 NA coding downstream 9345 3787388 ~ 3880750 (-)
CI01000010_03617450_03619486 NA coding downstream 270609 3617343 ~ 3619486 (-)
CI01000010_03557384_03566580 TAB3 coding downstream 322381 3556932 ~ 3567714 (-)
CI01000010_03544215_03547481 PRRG1 coding downstream 342614 3543520 ~ 3547481 (-)
CI01000010_03527436_03530341 NA coding downstream 359754 3527408 ~ 3530359 (-)
CI01000010_03912179_03913373 NA coding upstream 12625 3911683 ~ 3913373 (-)
CI01000010_03914320_03915250 LRRIQ3 coding upstream 15194 3914252 ~ 3915250 (-)
CI01000010_03941555_03947042 NA coding upstream 42497 3941555 ~ 3947042 (-)
CI01000010_03961520_03974921 SLC44A5B, SLC44A5, SLC44A5A coding upstream 62361 3961419 ~ 3974921 (-)
CI01000010_03992093_03992619 NA coding upstream 92043 3991101 ~ 3993606 (-)
G62699 NA non-coding downstream 258091 3631538 ~ 3632004 (-)
G62682 NA non-coding downstream 291060 3598826 ~ 3599035 (-)
G62650 NA non-coding downstream 451515 3438346 ~ 3438580 (-)
G62648 NA non-coding downstream 453167 3436698 ~ 3436928 (-)
G62636 NA non-coding downstream 487277 3402307 ~ 3402818 (-)
G64119 NA non-coding upstream 20612 3919670 ~ 3919890 (-)
G64126 NA non-coding upstream 30558 3929616 ~ 3931626 (-)
G64168 NA non-coding upstream 155479 4054537 ~ 4055332 (-)
G64169 NA non-coding upstream 158159 4057217 ~ 4059152 (-)
G61965 NA other downstream 2345044 1424425 ~ 1545051 (-)
G61888 NA other downstream 2644077 1244469 ~ 1246018 (-)
G61045 NA other downstream 3314584 572753 ~ 575511 (-)
G64237 NA other upstream 330892 4229950 ~ 4236416 (-)
CI01000010_04612793_04613017 SMIM15 other upstream 713438 4612460 ~ 4613135 (-)
G64564 NA other upstream 1150097 5049155 ~ 5242926 (-)
G64877 NA other upstream 2017199 5916257 ~ 5917011 (-)
G64918 NA other upstream 2194631 6093689 ~ 6096480 (-)
G62596 NA non-coding downstream 453961 3391336 ~ 3436108 (-)

Expression


Co-expression Network