LOC111192979


Basic Information

Item Value
gene id LOC111192979
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17924346 ~ 17929849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671451.1
GCGCATTGTGATGTaaatagtagcagtagcaggTAGCTAGCTGAGCTTAGCTTGTGGATCTCTGCGGTGTAGATAAGGAATTCTCACCGCGTTTAAACTGAGAGAAGCTGCGGGAGGAGTTACATTAACCCGAGTCTTTAGCGGGGAGAGAATATTCTGGGgggtttagtttatttaattagctttattttattagCGTACGTAAAGAACTAGGGCTAGCTAGGGAGCGAGCAGGCTAGCTAGGCTACCTATTTAGGCAGCTAGCCGGGCAGTGAACAGCTgaccgttagcttagcatagcttagcttaTATAGAGGAGCTGACTGGCTGGAGAGCTTTCTATTCGgatagctagctggctaacaacATTATCAGGCTTTATCTGTGTTAAATAGTTAGCTATCTTAGCTAACctatattttctgtaattaattatttagctATAGAAGCATTAAGTATTATAATAAGTTTAGAAGGAGTAGAGTCTTCAGTTCTCGTTTGGATGACTTGTAGTTAGTTAGTTCGCTTAGCTAGCTACTAGCTTTAGCTTACTGTTAGTCTGTTAGCTGTGGTTTGGGGTGTTTTTAAGTCTTTCTATTCGTATTAAACCCGTTTTATAGCTATAATTAAGCCTCCAGCGATGTTTTAAAACgttaaaaacgttttaaaagATAACAAACTCCTGTAATTAATTGAATTAACTTTCTGGACAGACCAAAGGACGTCGTTGTtggagagctagctagctaagctagttaaccTAACTACTTTACCTACAGTGCAGCTATGCTGACTGAAAGCAGGAAACGTCAGCGTACTCAAGGCGATGATGAAGATGCACATCTAATGCCTCAGTCCAAAAGATCCAGCGCAACACACAAGTCCTCTGAGCCCAGCGTAGAGGTGTGGGAGTCTGAGtccTCCAGCTGTGACAGCAGTGGGGTCAGTAGTCCGGAGCATGCagctgggagcagcagcagcaccagcagccaGTATGGAGCtgacaatctggcaaccctcgCCACCCTCGGGCCCTGCAGTCCCCTCAGCTCCTCGGACCAGACCGGCCCCAGCGGCCTGGGCTCGTACCAACATATCAACCAGGTCCTGAGAGAGGCGCACTTCCAGAGCCTGCAGAAAAGAGGACAGTCCCGGGACAGGTGATCTGCTGGCTTTCTGGGACGTTCAGGGACATTTCTTCTCATCTGTGGTGCATGAAAACGACGACGCCTTCGCTCTGCCGGAAGCCCGACCACGTTCCCCAGACGACAGGGTAAAGGTTAAAGGTCGAAGCTTAAATCGGCTCCATCGCCATCTAAAGTCTGCGAGTCTGCTCTTactaagattattattattattattattattattattaataataattattattttctaggtcttcttcttctttattttccaCACGCTAGAGCTCTCATTTGTGTTGGTGTGCTTTCGAATAGTAAGTGTGACCTGGAACTGTAAACCCGTCGACTAATTAGAGCACAAAAGTGTTCATATTGTAAGCAATAATAGCTTGTCTACGATGCAACCTTTTGTGACATTCACACTGtgtacttttctcctgaacagacCGGTTTACAGATGAGAAGTGAGAGCTTTGCTGTGTGAGCGACttttacttttcattttcattttgtttttgatttagAGTGGAACTGCAACttgaaacttaatttttttttccatttctttttattttaatattggtaatattattatttttattattttctgtcttGGGATTGGGCGTGAAGTAGCAGGTTACCTGTGCACTTGTGGCTTTATGGTAGAGGGGTGATAATGAGGGTCCAAGCGAATCATATAAAATCGtataaaatcatattaaataaaaaaaaaacaaatcatattaATCACAGCAACAAGGGAGTAATCCaggtatttgttttttatttttattattattttttgatcCCCTTTGTTTTATTGGCACTTGATGTACATTGATATACATGGTGTAAcctatagataaatataaatatatatgattaaaGGCAAGGTGCTTAATTCTGTGCGATGAAACAGCCGACCCTctacatcatcattattattattattattattattattattatttattttttttagtttgtttttttagttttagtccaggttcacactacgtgattttatttttattattattttttttttttaagatcagATTTTCTAGTAGCAACTCTTTTTGAAGATTTCTGACCAAATCGTTgtcaaaaaagaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671451.1 True 2264 mRNA 0.40 3 17924346 17929849

Neighbor

gene id symbol gene type direction distance location
otop2 otop2 coding upstream 45074 17860217 ~ 17879272 (+)
amn NA coding upstream 118520 17804284 ~ 17805826 (+)
LOC111192968 NA coding upstream 143754 17768928 ~ 17780592 (+)
LOC111192970 LOC108437139 coding upstream 160225 17748628 ~ 17764121 (+)
LOC107197389 NA coding upstream 178573 17732094 ~ 17745773 (+)
LOC103040205 NA coding downstream 55116 17984965 ~ 18132010 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding downstream 231223 18161072 ~ 18172237 (+)
LOC107197388 NA coding downstream 246378 18176227 ~ 18193170 (+)
LOC111192978 NA coding downstream 266906 18196755 ~ 18213076 (+)
LOC111192973 NA coding downstream 285843 18215692 ~ 18251351 (+)
G64710 NA non-coding upstream 108618 17769247 ~ 17815728 (+)
G64709 NA non-coding upstream 108697 17780682 ~ 17815649 (+)
G64595 NA non-coding upstream 245904 17677928 ~ 17678442 (+)
G64586 NA non-coding upstream 250185 17622861 ~ 17674161 (+)
G64579 NA non-coding upstream 301674 17565712 ~ 17622672 (+)
G64753 NA non-coding downstream 27764 17957613 ~ 18008671 (+)
G64754 NA non-coding downstream 42730 17972579 ~ 18061330 (+)
G64760 NA non-coding downstream 69526 17999375 ~ 18000064 (+)
G64763 NA non-coding downstream 77305 18007154 ~ 18008138 (+)
G64764 NA non-coding downstream 82632 18012481 ~ 18348193 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 204434 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1036151 16833290 ~ 16888195 (+)
G64449 NA other upstream 1048405 16873087 ~ 16875941 (+)
G64431 NA other upstream 1170786 16753043 ~ 16753560 (+)
G64289 NA other upstream 1481897 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 626279 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1293360 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1346953 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1350443 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1850814 19780663 ~ 19794325 (+)

Expression


Co-expression Network