LOC111193786


Basic Information

Item Value
gene id LOC111193786
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39271790 ~ 39282915 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675823.1
tgcacacaccaAAAGATAACGAAACTTGCACTACAGGATCTGAACCACAAAATGAGCACTCTGAGATCTGAGCGGAATAAGAACATTTAagcCAGAAACATGCTGATGGAAATAAAAGGCCTACATTTCTACATTCTACTCCATTTGATTTGTTGTTCTGGAGCTCAGGACATCATTGCTGAGCAATATCAAGATGTCTATGACAAGGACGTGACAACAATCCCAGAAACACTGAAAGATGGAATCAAAGAGCTCTTCTTTGTTAGTAGTCAGATTGATGTCATACCAAATGGAGCATTCTCCAAAAACCCTCAGCTGGAGAAAGTGGAATTTCTTGGTACATCGACGTCATCTGTAGAAGAAGGTGCTTTTGAAGGTTTAGAGAAGGTGGCTACCATTGAGATCTCAGGAACTAAACTAACATCACTGCCTGTTGGAGTTTTTAAGAATCTTCCCAGTCTTAatactttaattcttaaatcaAACCACATTCAAAGATTGGAAAAGGGGCTTTTTGATGGTCTCAGTGCTCTTGAGAAACTGCATCTGCATATTAATGAGATTTCATCAATTGACGAAGGAACGTTTGATCAGTTGGAGAATCTTCAGGAAATTCACCTTGCAAAGAACAAACTCATCTCCATCTCATCAGCCCTTTTCTCTAACCTCAAGAAACTGCAGGTGTTTAGAATTTATGAAAACCAGTTGACATCTATGCCAGATGGAATATTTGATAATCTGCGGAATCTGAAGGAAATTGCTATACATGGCAACAGAATTACAAACATACAACCCGATTTGTTCCcacataaaaacaaattgacaaaactttttttggacTCTAATCTCTTGACTGAACTGCCACCGGAGCTATTTGTGGACTTTTCTGCACTCAAATCTTTAACTCTGCATCACAACCAGCTCACCAGTCTCCCATCAGTCCTGTTTAGTGAAACTCAAAAAATTACTGAAGTTGGTCTATACAGCAATAATCTCAAAAGTTTACCTGCTAAGGTCTTTGCCCCActgaagaagataaagaagCTTGACCTGTCATCAAATCAATTTTCACATCTCTCTGGAGAGTTTTTTGAGGGTCTTGAGAAACTTTCAGAGCTTAATCTTCAGAAAAATTCCATTGAATCAGTTAAATCAGATGACTTTGCACATCTACAGTCTCTTTTAACACTTAATCTGGCTAAAAATAACATAAGCAACCTTCCAGGGGATGCTTTCGATTCTCTACCAAAGCTCAGTAAGTTGTATTTGAATGACAATCCATGGCAGTGTGATTGCAACCTGCTGCCATTCTACACATGGATGAAAGACAATGAGGGGAAAATACGATCTCCAGAGAGTATAACTTGTGAGAACCCTGAGGATCTGAGAGCACAGTCTGTTCTTTCATTAAAAGGAGATCAACTCATATGTCCCACAACTCTGCCACCAACTACAACAACTCTCCCACCAACTACAACAACTGTGACAACAACTCTGCCACCAACTACAACAACTGTGCCAACAACTACAACAACTGTTCCAACAACATTGCCACCAACTACAACAGCAACAACCACAACTCTTCCAGTCACAACCACTGTGCCTACAACAACCACTATTACAACCACAACCTTACCACCCACAACCACAACCTTATCACCAACCACAACTCTACCTACCACCACCCCAGAAACCACTAGGCCTACAACTCTACTTCAGactacaactacaactacaacaccCACCACTACAGTTACAACCACAGCACCCACAACTACAGTTACAACCACAGCACCCacaaccatagcaacaaccacaGCAATGACCACAGTACCAACAACAGTACCCACTACTATTGTGACAACCACAGTACCCACCACTACAACAACAACTACAGCAACCACTACTACAACAACAACTACACCACCCACCACTACAGCAACAACCACACCACCCACCACTACAGCAACAACCACACCACCCACCACTACAGCAACAACCACACCACCCACCACTACAGCAACAACCACACCACCCACCACTACAGCAACAACCACACCACCCACCACTACAGCAACAACCACAGTGATGCCAACCACAGTTACAACTCCAGAAGCTACAACAACATCTCTTCTGACAACAGTCAGAACAGTCGCAATCACACCCAAGACTTTTGTTTGCTCTGGATCCGCATACTCTCAGCACCCATCCTCTTTACTTCATTCTTCTTCTCAAGATGACAGGGCTTCCTCATGTAAGGCTTTGATGATTTCCTACACCATTATGCTGACACTGGAGATCTGCTGTACAGTGGTACTGGCCAAGTTTACatactctctgtactgttatcttgaagagaaagaaagattcTACTCTAGAGTCAACCTGACTCGATTCTCCTACAAAAAATCCATTACATTAAGACCAGTCTATGAGATTGAAACTGTGGCTCTATAAGAACCTGAATGAACTGTCTAGGTTGTACCTAATGGAATAGTATACAACTATGGTATGTTAATAGGCGGtagtaatgtactgtaatactGAAGATCATGTCCAGATCATGTtgttgccatcagcagccggactcTGAGAAAAAGTGCAATTGGCATTGTGTGATGtaggtcagcacaggcatctctcagctgatgtatcaaagATGGATTGCTGTGCTTCCTTCTGAGTGTCCTGGCTCACTGGTGATgctccatcagcagcagttggaaaagaggcggtggctgacttcacatgtgtcagaggagtgttggggcatcactagtgatagcaGCAGCCCTAATGAGTTGGTTGTGTAATTGGCCATGCAAATTGGGGAGATAAtggaataaaattagaaattaattatttttgtaaaaagcagtgtttaaaatatattccaAGAtaattaaagttgtaatatagTTGTAAAAGCCACACCATgttcttttgccttttttttaaatgaattactgTGTGTAGCATGTGTTAGAGAATTGCTATTGTGATTGGgctaaaaatctgaaaagtttaGTTGGCATTTGCTACAATTGGTTCAGAGGAGTTAAACAGATGATGTATAGACAATTTTAGAAATTAACTTAAGCATCTACAACTCAGaagatttatatttaattttgaaatttatttcttatatttttagaAATGAATATATGTATAACAAATGCATGTGCACAACCTTTTATgacttaacttttatttttggtcTTTTTATTGACAGTGTCAATTGTTTTGATTAAAtaagattttatatattttttgtcttgttATGTTCTTTGTAATAATTTCTTAAAAGCACATTTGTATACTATTTACAGGGTTGGACTGGTAATCTGGCGTACCGGGCAAATGCCTGGTGGGCCGACAATCCTCGGGGGCCGATGCTTTTCTAAGAGAGGGGGCGGCCCATTGGCCCATACTCAATATAGACAGTAGACTGAACCAATCAGGATATAGGAAGAAATCGGCCACACCCTTTCTCTGCGTGGTTTAGCTCTGAGCGCATGGGCGACTGGGTCCGACGCTCgtactgtctctctttccctttctcgctctttctctttctttctctgtctctctctctctctctctgactgtctctctctctctgatgtaagtgattgacacaactaatataatttaattttatcaatCAATCTTAAACTACACAGATCAGACAAAATGGTGTGGTTAACAATAGACACTAaacttcttttatttaatatgcTGATGATACATTACAATTCTCTGTAACCCCACGTACATAAATTACAAGTGGGTTGTGCTCTGCTAATTATGAGGGGccggtctaaaccaaaaatgccagggccgattttttttttgtcccagtccagccctgactatttaaatgtattttgtattattataagaCACTgcttttattgatgtttttgcTTCTTGTGAGATGTTGTTATTGGAGATTGACAGGGAACTCATTTACTATGTCAGCAGAGAAGGATtaattgtatatgtgtgtatgtgtgacggagggagagaaagagagagggagattaaAAGAGAttcattttgttatttcatttcagctgccCTAGTTTAGCAGTGATATGAATGTGTAATAAGATCAAGTCAAGATTGTATAGTGACGTACAAAAATTGTTGTTCTAATTAAGTGAATGTATTTCATAATaccaataaatgtattataagcTTGCATCTGAACTGGACAAAAGATGATGATGTTAAACACTATTGttgtttacattaataaaaagcaccaatgtgaaaattaaagatattaatattaataaaataccaGTGAGTAAAATA

Function

GO: NA

KEGG:

id description
K13023 CPN2; carboxypeptidase N regulatory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675823.1 True 4323 mRNA 0.39 3 39271790 39282915

Neighbor

gene id symbol gene type direction distance location
lnp1 lnp1 coding downstream 246628 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 260036 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 271625 38996878 ~ 39000165 (-)
chd1l NA coding downstream 275324 38972149 ~ 38996466 (-)
LOC111193785 NA coding downstream 290645 38978736 ~ 38981145 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 1336567 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 1472433 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 1941926 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 1968102 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 2041807 41324722 ~ 41335529 (-)
G116964 NA non-coding downstream 86034 39185515 ~ 39185756 (-)
G116961 NA non-coding downstream 120559 39150828 ~ 39151231 (-)
G116954 opa1,LOC107585173 non-coding downstream 222225 39046347 ~ 39049565 (-)
G116946 NA non-coding downstream 269437 39000643 ~ 39002353 (-)
G116923 NA non-coding downstream 643675 38626779 ~ 38628115 (-)
G117002 NA non-coding upstream 78555 39361470 ~ 39361798 (-)
G117005 NA non-coding upstream 92018 39374933 ~ 39375276 (-)
G117009 NA non-coding upstream 146198 39429113 ~ 39429541 (-)
G117026 NA non-coding upstream 214887 39497802 ~ 39498358 (-)
G117059 NA non-coding upstream 374279 39657194 ~ 39657425 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 308096 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 372344 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 887192 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 1023166 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 2226002 37041361 ~ 37045788 (-)
LOC103028549 NA other upstream 1302 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1077404 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1448381 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1533218 40816133 ~ 41017814 (-)

Expression


Co-expression Network