G60572


Basic Information

Item Value
gene id G60572
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 103909 ~ 104670 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU68939
TTCCCTCAATCGAAAGCCTATGCATTTTTCCCATAGACTTTTGGAAAATTGCAAAAAATAAGCTCTGTGTTTAACAAAGGGTTATGACACTTACACGTTTTGTCTATCAAGATAATCTTTACAAGTTAACACAACATTTATACATTTTGAAGCCTAAATAAAGTCGTCAGATATAAAAAGCTAACAGTAGGCTATAAACAGACTACAGCACACCATGGTCGCGGATCAACGTCACCACCACCAAGCTTCCTCA
>TU68940
GAAGTGGCATTAAGGTATATTTACACAGACAGTAGCTCAGAGGTGGCATGAAAATGAATGAAAAATGAAATGATACTCTAAAGCTGCGGTCACACTAGACTTTGAACGTGCGAAATTTCATTGGATGCTGCAACGGTCGTGATATGACTTCACAGTCTACAGCGTCTATTTTATAAACATGAATTCAACATGTGAGATATAGTAATACATTCAAAATGTAAAAATATACAACCTACTCGACTTTACTGCAAAAATATAATTCTTTTAATTCAGCCAAGAGGTCATGCCATGACGAATCGATCTTCTACTGGTCACACGTCTTCACGTGATGAAATTCGCAGGTCAGAGTTCAACAAACTTGATCTTTGGAACGCAGCGAAATGCAGAATTTTTCGCACGAGCTTGCGTTTCCGGTCTGACGCATTTGCATGCGTATGAATGGAAGTCAATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCCAACCCGGAAGTTAGCAGCGCACGGGTTCCCTCAATCGAAAGCCTATGCATTTTTCCCATAGACTTTTGGAAAATTGCAAAAAATAAGCTCTGTGTTTAACAAAGGGTTATGACACTTACACGTTTTGTCTATCAAGATAATCTTTACAAGTTAACACAACATTTATACATTTTGAAGCCTAAATAAAGTCGTCAGATATAAAAAGCTAACAGTAGGCTATAAACAGACTACAGCACACCATGGTCGCGGATCAACGTCACCACCACCAAGCTTCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU68939 False 253 lncRNA 0.37 1 103909 104161
TU68940 True 762 lncRNA 0.40 1 103909 104670

Neighbor

gene id symbol gene type direction distance location
CI01000010_00154875_00293942 NPHP4 coding upstream 50205 154875 ~ 293942 (-)
CI01000010_00327845_00329442 CUNH1ORF174 coding upstream 222557 327227 ~ 329442 (-)
CI01000010_00335493_00356496 CEP104 coding upstream 230770 335440 ~ 356496 (-)
CI01000010_00421834_00427873 NA coding upstream 316567 421237 ~ 428143 (-)
CI01000010_00517865_00522058 NA coding upstream 412842 517512 ~ 522058 (-)
G60571 NA non-coding downstream 80317 22004 ~ 23592 (-)
G60569 NA non-coding downstream 82853 20187 ~ 21056 (-)
G60923 NA non-coding upstream 25049 129719 ~ 218167 (-)
G61007 NA non-coding upstream 166438 271108 ~ 271353 (-)
G61011 NA non-coding upstream 215738 320408 ~ 322203 (-)
G60958 NA non-coding upstream 261217 365887 ~ 367025 (-)
G60953 NA non-coding upstream 277394 382064 ~ 383981 (-)
G61045 NA other upstream 468083 572753 ~ 575511 (-)
G61888 NA other upstream 1139799 1244469 ~ 1246018 (-)
G61965 NA other upstream 1319755 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 3425000 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3785399 3890069 ~ 3899058 (-)

Expression


Co-expression Network