G97678 (s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175)


Basic Information

Item Value
gene id G97678
gene name s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6532516 ~ 6565003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU131600
GGTCCGGGCGGTGCCTGAGTATATAAATCTCCCTTCAAACATTCGCACTTTTTTCCTGCAGGACAGAAATCTCTGCTCTACCAGTTCCTCCCCGTCGTCTAAACCGTGAGCCACCATGCCGACTGACCTGGAGAGATCTATGGAATCCCTGATCACGGTTTTCCACCGTTACGCCGATAAAGAAGGCAACAGCAACACACTGAGCCGCAGGGAACTCAGACAGCTCATCGAGTCCGAGCTCCCCACCTTCCTTAAGtCTCAGAAAGACCCCGCCACAGTGGATAAGATCATGAAGGATCTGGACGCTAATGGAGACGGAGAGGTCAGCTTTGAGGAGTTTGTGTCTCTGGTGGTCGGCCTGTCCATCGCCTGTGAACAGTGCTACCAGCTGCACAAGAAAGGAAAGAAGTGAAAGAAATGCACGGAGGaaacaagagaaagaggagaggaggaaagaTGTTGAATTTTCtactaaatcattttataaaTGAGTTTTAATAAACATGACTGCGAACAACAAGCCTGCGTTTACGTGTGATTTTGTGTTCCTATACAGgaagaacattaaataaaagttaaataaacgtTAATTAACGTTTATTTAACACTGCCTAAAAGGGGTCAGTTAATGTTGACATTTTGACACTGAATCAATATTTCTTTAAAGGTTTTGAATGATTGGTTTACAAACTAGGtacacatatttaatttaagcaAAATTTAACACAAACCATGCATATTGGCTCGATGGAAGGATAAGAAGGATGGACGTAATTgcagttaatataaatgtaataaaatgaaacaagcaaaacagaaaacaaacaataaaaacactaataaaaacaataaatatatacaacactgggagaacaaatgaaaaaagaaaagaacaaagacTAGTCAAAACTAGGGAAACAATAATAATGGgatcaacaaaacaaaaccacaaACACAGCATAATagcacacacaggaaacattgAATCgaaggggcttaaatacacaaggagggtgaggaacacctggggacagtaatgagggggcggggttacaaacaagacacaaggtgacaacactaatggctagggcggagacaggacaataacaaaacaaggccATGTGCTTGAAAGAGCACGtggctgggaacacaagacagaaacacagagggCAGAAGCACATGGAACCCAAAGAGGAAAAAGACAAgacatataaacaatataagcCCTAACATTAACATGCACGAATGATGTCAAAGTGTCTGAGATCAATGGTGTTTTAATGCTTTAGCGATGATAAAATGAACAATGGTTCAACTTGCTTTAGCAGTTGTCATCTTTGGGTGGGCATttgatttaagtgatttataGCTTTtccagcgactcggttccgatacatcagctcacagacgcagccttgtgctgatccacatcaccctaggagtgatgaggaaaaagagcaccatctactatatcatctactgtacccacccagagagagcagagccaattgtgctttttcagggctctggcagctgatggcaagatgcatgaccaggattcgaaccagtgatctccctaTTGTAGTGGCAGCAGAGGCCTGGTTAGCGCTAGTTGCTTCCCAGTGTTACTGATCAGCATTTTCCACCATGTGCTTCACCCCAAATGAGGCTTCTCACACTcataattaaagataaaattagATACTCCACTGTGTATCATGAGCAAAATATATACAACAACCCCACATAGAAATCTATGGCAAAATCAGGTTGTGAAACCATCTGAGGTTACCAAATAAAGCTCCTGGCACTCAGGTTTCATTCCaaaccttctttttttttacagcaacatCTGTTTCCTATTCACTGAAAGCGCAGTGCCAGGCTGAGAGCATTGTTTGGCTGGGAGATTTATAATATGACTAGATCAGAAATTTGAACCTCCTGGTGTTCTGGAAACAGAAATGtggaggagtttttttttttt
>TU131601
tttttttttttttttttttttttttTTTTTTCCTGCAGGACAGAAATCTCTGCTCTACCAGTTCCTCCCCGTCGTCTAAACCGTGAGCCACCATGCCGACTGACCTGGAGAGATCTATGGAATCCCTGATCACGGTTTTCCACCGTTACGCCGATAAAGAAGGCAACAGCAACACACTGAGCCGCAGGGAACTCAGACAGCTCATCGAGTCCGAGCTCCCCACCTTCCTTAAGtCTCAGAAAGACCCCGCCACAGTGGATAAGATCATGAAGGATCTGGACGCTAATGGAGACGGAGAGGTCAGCTTTGAGGAGTTTGTGTCTCTGGTGGTCGGCCTGTCCATCGCCTGTGAACAGTGCTACCAGCTGCACAAGAAAGGAAAGAAGTGAAAGAAATGCACGGAGGaaacaagagaaagaggagaggaggaaagaTGTTGAATTTTCtactaaatcattttataaaTGAGTTTTAATAAACATGACTGCGAACAACAAGCCTGCGTTTACGTGTGATTTTGTGTTCCTATACAGgaagaacattaaataaaagttaaataaacgtTAATTAACGTTTATTTAACACTGCCTAAAAGGGGTCAGTTAATGTTGACATTTTGACACTGAATCAATATTTCTTTAAAGGTTTTGAATGATTGGTTTACAAACTAGGtacacatatttaatttaagcaAAATTTAACACAAACCATGCATATTGGCTCGATGGAAGGATAAGAAGGATGGACGTAATTgcagttaatataaatgtaataaaatgaaacaagcaaaacagaaaacaaacaataaaaacactaataaaaacaataaatatatacaacactgggagaacaaatgaaaaaagaaaagaacaaagacTAGTCAAAACTAGGGAAACAATAATAATGGgatcaacaaaacaaaaccacaaACACAGCATAATagcacacacaggaaacattgAATCgaaggggcttaaatacacaaggagggtgaggaacacctggggacagtaatgagggggcggggttacaaacaagacacaaggtgacaacactaatggctagggcggagacaggacaataacaaaacaaggccATGTGCTTGAAAGAGCACGtggctgggaacacaagacagaaacacagagggCAGAAGCACATGGAACCCAAAGAGGAAAAAGACAAgacatataaacaatataagcCCTAACATTAACATGCACGAATGATGTCAAAGTGTCTGAGATCAATGGTGTTTTAATGCTTTAGCGATGATAAAATGAACAATGGTTCAACTTGCTTTAGCAGTTGTCATCTTTGGGTGGGCATttgatttaagtgatttataGCTTTtccagcgactcggttccgatacatcagctcacagacgcagccttgtgctgatccacatcaccctaggagtgatgaggaaaaagagcaccatctactatatcatctactgtacccacccagagagagcagagccaattgtgctttttcagggctctggcagctgatggcaagatgcatgaccaggattcgaaccagtgatctccctaTTGTAGTGGCAGCAGAGGCCTGGTTAGCGCTAGTTGCTTCCCAGTGTTACTGATCAGCATTTTCCACCATGTGCTTCACCCCAAATGAGGCTTCTCACACTcataattaaagataaaattagATACTCCACTGTGTATCATGAGCAAAATATATACAACAACCCCACATAGAAATCTATGGCAAAATCAGGTTGTGAAACCATCTGAGGTTACCAAATAAAGCTCCTGGCACTCAGGTTTCATTCCaaaccttctttttttttacagcaacatCTGTTTCCTATTCACTGAAAGCGCAGTGCCAGGCTGAGAGCATTGTTTGGCTGGGAGATTTATAATATGACTAGATCAGAAATTTGAACCTCCTGGTGTTCTGGAAACAGAAATGtggaggagtttttttttttt

Function

NR:

description
PREDICTED: protein S100-A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131600 True 1987 TUCP 0.42 3 6558857 6565003
TU131601 False 1964 TUCP 0.41 4 6532516 6565003

Neighbor

gene id symbol gene type direction distance location
slc50a1 slc50a1,LOC106574309,LOC106606111,LOC107582072 coding upstream 37528 6486709 ~ 6494988 (+)
LOC103021450 efna1b,LOC108429932,LOC107595011,LOC107714705,LOC107699555,LOC108269829,LOC107582071,LOC106598406 coding upstream 48809 6456511 ~ 6483707 (+)
flad1 flad1,LOC100286671 coding upstream 402915 6117809 ~ 6129601 (+)
chrnb2 chrnb2,chrnb2b,LOC107594892,LOC107673697,LOC107714697,LOC107677024,LOC107582065 coding upstream 548274 5946355 ~ 5984242 (+)
she she,LOC107677035,LOC107723582,LOC107714680,LOC107673726,LOC107582163 coding upstream 597655 5922768 ~ 5934861 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding downstream 40501 6605504 ~ 6607954 (+)
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding downstream 46715 6611718 ~ 6631736 (+)
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding downstream 147418 6712421 ~ 6823042 (+)
rab13 rab13,LOC107723501,LOC107714709 coding downstream 287780 6852783 ~ 6860824 (+)
fam189b fam189b coding downstream 296595 6861598 ~ 6879371 (+)
G97674 NA non-coding upstream 11601 6508111 ~ 6520915 (+)
G97672 NA non-coding upstream 68296 6462566 ~ 6464220 (+)
G97639 NA non-coding upstream 373596 6154825 ~ 6158920 (+)
G97637 NA non-coding upstream 388634 6141717 ~ 6143882 (+)
G97624 NA non-coding upstream 467715 6063761 ~ 6064801 (+)
G97882 NA non-coding downstream 189738 6754741 ~ 6756061 (+)
G97883 NA non-coding downstream 191713 6756716 ~ 6757072 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding downstream 209275 6774278 ~ 6850763 (+)
G97896 NA non-coding downstream 246518 6811521 ~ 6812360 (+)
G97870 NA non-coding downstream 259915 6824918 ~ 6827579 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 149799 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 681986 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1551569 4965470 ~ 4980947 (+)
LOC111193421 mboat1 other upstream 2633597 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 3093790 3389051 ~ 3438726 (+)
adar adar,LOC107723500 other downstream 89347 6654350 ~ 6681691 (+)
apoc1 NA other downstream 497129 7062132 ~ 7066029 (+)
G97926 NA other downstream 503685 7068688 ~ 7070129 (+)
G97931 NA other downstream 562801 7127804 ~ 7130809 (+)
G98636 NA other downstream 2747403 9312406 ~ 9312803 (+)

Expression


Co-expression Network