G98969


Basic Information

Item Value
gene id G98969
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 10453242 ~ 10455166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU133437
CTGAATTCACATCACTGGGCCCGAGGCGAGAGCTCTACTCGGACCTTCTCGCTTCGTGCCGGGTTTGTCCTGTTTTAGCGTGTTTTCTGCAGTCCGTTCCATCGTGGTTCTGAGTTCATCAGGCTGGTCATGCTGGGCTTAACCCTGGCTCCAACTAGATCGCTTCACTTTTCTGTAGccctgtttttcttctttttaggAATGCTTTACACTGTGACTGATCATCTTCTGCTGCATGTGTAGCATACAGACTATTACCTAATACAAAGTGTGACCTGTTTCCTTGTATCTCTGTATCTGTCAGTTTAGTATAGACTGTGTGGCCAAAGTATCTGAATTTCTGCTCCTCCACCATTTCTGCTAAAATAAAGggtatttatcacaatattacaatattatagaCTTGCTCTTGCGGGCTTCATTGATatctagtttttatttccactgCTGACAACAGCTTTAAATGTAGGTTAATACATATTGTGGAATCCCACAGGGCTCCGTTTTAGGGCTTATAAAGTTGTCATTAATTGTGACTTTAAGgcgcaatttttttttaagtcaagcTAGCGCtcaatgttaatctacacagaattcTTTACTTAAAACCTTTCAATTCCTTTTCATAaggtaaagcgcttctgtttatctacagtaacttagatttccagatttttttcgAAGGCTAGCCAGACAGCTctgcactgaggaaccctgagtgttccaataagggcgatattagctagctagcagtttgtcccacatagcttgttttaacacagtaaatgggAAGGCTACAATcaaatatactcgcctctgaatggcaagAGAGCTaagtgctagccatggttaaGAACAGGTTACAGGCagataattctcacctctgaacgacaaaagagctaactagtgcttagtgcggttagcagcttatgctaatactgctcaaaACTATAACCCAGtggagaggctttactgctactaacaaattgactggtaaaattcatattatAAGGCTTGCTcttgatttttggggaaaaatgaaaggattttaagtgcgccttatagtgcgaaaaatacagtaagtggGCTTACATAATAGATGTTAGGActttgctgtaaggatttgattgtattcagccaCATCATAGAGCATCAGTTACTGGTGAGACGTCTGTTACTGGATGATGTTGAATAAATCATTCTACCACTCAAGTTCCTCCTAAGAACTGCAGAGCCCAAATGTCTGAGgcttttattctattatattatagatTATACACGATTTGTGAACACCTGTTAAAAATAGGTGCAAATGCAAGTAGTTAAATGCAGATGTTTAGAATTCTGGCAAACTCTTGTAATTTAAGCTGAATTGTTTCTATCTTCCTCctcatactttaaaaataacattgcccAAGTTAAAACACAGGGCAGACTCCTCTACATTTACAGTAAGATCTTATATTAACTGAAACAACCACAGAATTTGAGGTATTGGTCCTTAACTGTATGCTTCAAATGCAGCAGACACAGATCAGGTTAAAGAACGCTGGAGCTGAACATTCAGGCATTTCACGCTCACTGTAACAGAGCCAGCAACCTGTCAGATACTCATTTCATAATTCTCAAAACTCCATCCTCCCTCAATATCCCCTCCAGCCAGCTATGGCCCCTCCATTCCTGTAGTTATCCAGCCCAGCCCCACAGTATGACCATCTCAGTATGCCACTATCTGCTCCATCCCTTCATGTCACATCAGCTGCAGGTTGTCCAGTGTGATGGCTTCCATGTTGACCCCGCCCTCCAGTGCAGTGTGGTAGAGCTCTATGGCCTCGGCGAGGTCGCCGCTCGTCTCTATGATGGCTATCGTCTCCCCGAACTCATTACACATGATGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133437 True 1898 lncRNA 0.42 2 10453242 10455166

Neighbor

gene id symbol gene type direction distance location
cic cic coding upstream 1851 10379229 ~ 10451391 (+)
pafah1b3 pafah1b3,LOC108432331,LOC107671211,LOC107755833,LOC108266541 coding upstream 405271 10041913 ~ 10047971 (+)
LOC103040337 NA coding upstream 418974 10027394 ~ 10034268 (+)
LOC103040655 LOC103040655,LOC108266557,LOC108432293 coding upstream 427974 10020638 ~ 10025268 (+)
cxcr3 NA coding upstream 494258 9948259 ~ 9958984 (+)
gsk3a gsk3a,gsk3ab,LOC103362704,LOC107724158,LOC108412552 coding downstream 14009 10469175 ~ 10488569 (+)
rabac1 rabac1,LOC107551691,LOC107582040 coding downstream 316332 10771498 ~ 10778123 (+)
LOC103032145 LOC108438260 coding downstream 624369 11079535 ~ 11101099 (+)
zfat zfat coding downstream 656889 11112055 ~ 11127909 (+)
LOC103022365 jarid2a,LOC108443719,LOC108265176,LOC107657689,LOC107593646,LOC107714830,LOC107595576 coding downstream 731983 11187149 ~ 11281470 (+)
G98954 znf574,LOC108412555,LOC107717428,LOC107700188,LOC107551698 non-coding upstream 104649 10346487 ~ 10348593 (+)
G98938 NA non-coding upstream 255331 10183398 ~ 10197911 (+)
G98935 NA non-coding upstream 277381 10174728 ~ 10175861 (+)
G98841 NA non-coding upstream 399911 10049478 ~ 10053331 (+)
G98829 LOC103025791 non-coding upstream 425891 9968591 ~ 10027351 (+)
G98966 erf non-coding downstream 48785 10503951 ~ 10510431 (+)
G99045 NA non-coding downstream 264855 10720021 ~ 10720575 (+)
G99073 NA non-coding downstream 369309 10824475 ~ 10824863 (+)
G99075 NA non-coding downstream 377000 10832166 ~ 10832404 (+)
G99083 NA non-coding downstream 404042 10859208 ~ 10861238 (+)
G98934 grik5,LOC107551699 other upstream 274783 10172553 ~ 10178459 (+)
G98845 NA other upstream 384240 10060433 ~ 10069002 (+)
G98840 NA other upstream 451196 9996204 ~ 10002046 (+)
G98636 NA other upstream 1140439 9312406 ~ 9312803 (+)
G97931 NA other upstream 3322433 7127804 ~ 7130809 (+)
G98967 NA other downstream 38625 10493791 ~ 10498518 (+)
LOC103033199 NA other downstream 544759 10999925 ~ 11027424 (+)
abhd16a abhd16a,LOC107717442,LOC107723554,LOC107582042 other downstream 573656 11028822 ~ 11047690 (+)
LOC111188200 rusc1 other downstream 838926 11294092 ~ 11302885 (+)

Expression


Co-expression Network