LOC103040655 (LOC103040655,LOC108266557,LOC108432293)


Basic Information

Item Value
gene id LOC103040655
gene name LOC103040655,LOC108266557,LOC108432293
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 10020638 ~ 10025268 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250877.2
TGGAATTGGGTCAGTACTGAAGAGCGTAGTTGCCATAGGAGACACACTGTTCAGTGTGGTTATGTTGGTCAGTTTTATGGCGTTCGTTTTGAAGGCGAGGTGCATTAGATGCTGCattaatcaaaaaaaaagaaaaaaaaatgtcacaatGCAGGGCCGCACACCACACCATGTGCATTTAATGAACAGTAGATAAGAGTGTGTAAATACCCGCCTCGCCCCAAAACCAAACACCTTTTTTCCACTTCAGCCGCCCACTGCTGCTTAGAGCACCTACAGGCCTCTCCAGCTCTACTGATGGAGCTGTGACATCATTACAGCTATAAACCGCAGGAGTCCTCGTATCATCCCTCGCATTCGCTCTGAGGTTTATGAGCTCTTTCACTCTGAGACCCCTAAACCTGCAACAGTGATGGCGTATCAGACCGAGGTGATCATGACTCAGCCGCAGGTGACGGTCACCAATTACAGCATCACCACTGGTTCCTCTGACTGGAGCTCCAACCTCTGCGACTGCTGTGATGACTGTGGcatctGTCTCTGTGGGACGTTTATCCCGTGTATCCTGGGCTGTCAGGTTGCGCAGGACCACGGGGAGTCCTGCTGCCTGCCCTGCCTGCCTGGAGCCATGATCGCTCTGAGGACCAGCATCCGAGACAAATACCGCATCAATGGGTCTGTCTGTGATGACTGGATTGTTATGGCCTGCTGTCCTCTCTGTGGAATCTGTCAGTTGGCTCGAGAGCAGAAGACGAGAGGCTAATTTCTCAAAAGCTCAGAAGGAGAAGAACTGTTGGCTGTATGATGAAGAAAATGACTCTATATTATGAATCATGAATGTATAATAACTGATATAGATATAGTTTAAGTATTGCAGTGTTATTGGTGTTATTGATGCAGTCACAGAGTTGTTACTAACTGAAACTTTCACACGATAAGTTGCAGGGTGGGAGCGGCAATTCTATTATCTGAGGTTTAGAGATGCACCTAACAAACCCAGCCCCGCCACCCTCCCTAAAATTCCCAGGAGGAGTGAGGgtgtctaaaataaaaaataaaataattcattcatttcaggaatatagtataatagtataactgtataatcataatgtggcaaaataaataatatagcataaaatttataatgcagcaaataatattgcagaatatttagtgcatgcatataaactgcaaactaaaacaattatacagtaaatacacctaaagcttcacagacAGAACAGcactattatcacgatatggatttttaatatcatgatatttctgtgtcacgatatattgtatacaat

Function

NR:

description
cornifelin homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250877.2 True 1313 mRNA 0.43 4 10020638 10025268

Neighbor

gene id symbol gene type direction distance location
cxcr3 NA coding upstream 61654 9948259 ~ 9958984 (+)
LOC103041570 NA coding upstream 110261 9864750 ~ 9910377 (+)
LOC103042078 NA coding upstream 160329 9832976 ~ 9860309 (+)
lag3 NA coding upstream 189261 9806778 ~ 9831377 (+)
usp5 usp5 coding upstream 219901 9777089 ~ 9800737 (+)
LOC103040337 NA coding downstream 2126 10027394 ~ 10034268 (+)
pafah1b3 pafah1b3,LOC108432331,LOC107671211,LOC107755833,LOC108266541 coding downstream 16645 10041913 ~ 10047971 (+)
cic cic coding downstream 353961 10379229 ~ 10451391 (+)
gsk3a gsk3a,gsk3ab,LOC103362704,LOC107724158,LOC108412552 coding downstream 443907 10469175 ~ 10488569 (+)
rabac1 rabac1,LOC107551691,LOC107582040 coding downstream 746230 10771498 ~ 10778123 (+)
G98831 NA non-coding upstream 16774 9947394 ~ 10003864 (+)
G98798 NA non-coding upstream 249440 9770433 ~ 9771198 (+)
G98795 p3h3,LOC107700158,LOC107724912 non-coding upstream 256013 9754221 ~ 9764625 (+)
G98772 NA non-coding upstream 268928 9751178 ~ 9751710 (+)
LOC111193448 NA non-coding upstream 284159 9725074 ~ 9736479 (+)
G98841 NA non-coding downstream 24210 10049478 ~ 10053331 (+)
G98935 NA non-coding downstream 149460 10174728 ~ 10175861 (+)
G98938 NA non-coding downstream 158130 10183398 ~ 10197911 (+)
G98954 znf574,LOC108412555,LOC107717428,LOC107700188,LOC107551698 non-coding downstream 321219 10346487 ~ 10348593 (+)
G98969 NA non-coding downstream 427974 10453242 ~ 10455166 (+)
G98840 NA other upstream 18592 9996204 ~ 10002046 (+)
G98636 NA other upstream 707835 9312406 ~ 9312803 (+)
G97931 NA other upstream 2889829 7127804 ~ 7130809 (+)
G97926 NA other upstream 2950509 7068688 ~ 7070129 (+)
apoc1 NA other upstream 2954609 7062132 ~ 7066029 (+)
G98845 NA other downstream 35165 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 147285 10172553 ~ 10178459 (+)
G98967 NA other downstream 468523 10493791 ~ 10498518 (+)
LOC103033199 NA other downstream 974657 10999925 ~ 11027424 (+)
abhd16a abhd16a,LOC107717442,LOC107723554,LOC107582042 other downstream 1003554 11028822 ~ 11047690 (+)

Expression


Co-expression Network