LOC103041570


Basic Information

Item Value
gene id LOC103041570
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9864750 ~ 9910377 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250880.2
gtgtgtgtgtgtgtgtgtgtgcggtactGTGAGTTATAGGCTGCTACTGGCACTGTAGGTCGCTCAGCATCAACACAGGGAGTCTTATCACTTTCTGCACTTTCTGAGCGCTGCCAATCAGGTGGAAGGGAGGGGTCAAAAACGTCGTTTTTAGAACAACAAGACATTTCACGCTGCTCGTCTGCGCATCCGGAGAGAGGACGGCTGAAGAGAAGCGGCACGCCATCCGATCGTGCGATCAGAGAGCGAATAATTCAGGAGGCAGAATGCTAATCTTATGGATGCTGTTCCTCCAGTTGGTCTTGGCTCGCTCCACCACAGgacAGAAGATTTTCGCTCAGGTTGGAGGATCTGCAACCCTTCCCAAAGGGCAATTTGCAGAAACGGAGAACGTATATGTGAGGTGGTACTTCTCCGTTACAGGGGCAAATAACTTTACTTTACTGATTTGGAGGAAACATAAGGACCCCCCAAAGCCAGAAAACAAAGACTGGCAGAGTCGAGTGTCTCTTTCAGAAGACTCCTCTCTTATCATCTCACACATCCTGGAAAGTGACTTTAATGGAGTCTTCAAATGTGAGCAGGACAACTTCAGAAACTCAGCTGAGGCGCGGTACTCACTGACCCGTGtgcaaaTGCCTATGAATCTTCTTCTCCTGGAAGGTGAGGAGCTCTCTTTGGATTGTAAGATGGAGACGCCTGTAAAATGGACAGCACCCAACGGCACCTCGTATATCAATAGACTGTCTGGAAACAAGAACATCCTGAAAGTGCCGAACACCTTAATCCAAGACAGCGGAGTCTGGGCGTGTGAAGCGAGTGCAGGCCTTAGAAAATTCAGAGCCGCGACTGCTGTGACCATCCTCGGTCTCTCCCCCCCTCCATCAGACACCGTCTACACCTCCCTCTCTTCTTCCATCACTCTCCCCTGTTCCCTCTCCACTGATGTTCCTTGGTCTCAGTTACGAGAGAAAGGTCTGCAGGGCGGCAGCTGGAGCTTCTCCCCGCCGAACCAGTCCCACCAGCAGGGTCACCAGCTCCTCACACTGGGGCCCAACCAAACCCAAGCCTGGAGAGCACAGAGCACCACCAGCTGCCTCACTGAGCGTGAGTTCAAGAACCGCGACCTGTCTGCTCAGACCCAGAAAGTGTCCACAGACTGCAGGGGGACGTACCAGTGCAGCCTGGAGTTCAGGAACAAGAGACCAATGAGAAGAACGGTGAAGCTGGAGGTGCTGGAAGCCCTCTCCTCTGCTCCTGCGGGGGCACCGTTACTGGAGGGTGATAAAGTGAGCCTGAACTGCAGTCTAGGGGTCCCGCTGCCCTCTGACCTGGGGGTGAAATGGACGCCCCCGAAGTCTTCAGCTTTTTCTCTGCCTAAAGCTCATGGGGTCCACCTGTTCCTCCCTGCGGTCAGTGTAAAGGACAGCGGGGTGTGGAGGTGTGAACTGATGAAAAATTCAGTTGTTCTGACGTCGGCTTCAGTCGCTCTGAAAATAGAGAAACTAGTGAAGACCTGGGTGATCGTGACCATTTGCAGTGCTTCCATCTTCATCCTCCTTCTTATCATCACTCTTATCATCATTCATAGGCGCAGACAGgtTGTTATTACCAGGCGAAAGACCAGATTCTGCTGCTGCAAGAAtCCTCAGCCCAAAGGTTTCTACAAATCCTGAGGACAGATCCTTGATCCCATCATGACCAGCAGGGCTCCAGTCAGACTGGAGTCTGAAGGATGCTGGTCTCCTGTCTGAGCAGAAGCTGTGCTGAGCTGAGCTTATTGGACTGATAATAAGTGTTTCTCCTGCTGTTGTGTAAATATGAACTCCCAATTCTGCTGGAAAACATGGTTCTATAGTATGTTAAATATTTGAAAGATAATGAAGGGGATAATGTTGATTCAACCTTTATATGACATGGATTCAACTGTGGATAAACATTGAAATGTTAGCtgggctgaatgcaatcaaatccttcaCAGCAACTAAGCGACGTCAAGTTTAAAGCCTTTCCGGAAGAGTAGAGGCTTctgtttgtaaatatattttgatttgaGAAGCTATGCCTTGTCTGCTTGTCTGTTAACTGTTTAAATgtatcattaaataaatatgtacaacagaatatataataaattaaataatcttagtgcatcttaaaaaataag
>XM_007250881.3
ttattattattatagttgcCAAGTATGTTTTAAAGGATTACATAGGCAATGAAAGGTTAATGGGACTTAAATTAGAATTGTAAAAAATCCTATAAAATATATGACCAGCACTGCAAACAATTTTAGAGTTTTATCTTACAGACCAAGCAATTCTGGGTTGAAATATAAGCAGAACACACGCAGCATACTAACTGGCAACACAATGACATTTTAGTAGAGAAAATGGATTTGACATGAATTTGCAGCATTTTTTGGAGGAGGCAGAATGCTAATCTTATGGATGCTGTTCCTCCAGTTGGTCTTGGCTCGCTCCACCACAGgacAGAAGATTTTCGCTCAGGTTGGAGGATCTGCAACCCTTCCCAAAGGGCAATTTGCAGAAACGGAGAACGTATATGTGAGGTGGTACTTCTCCGTTACAGGGGCAAATAACTTTACTTTACTGATTTGGAGGAAACATAAGGACCCCCCAAAGCCAGAAAACAAAGACTGGCAGAGTCGAGTGTCTCTTTCAGAAGACTCCTCTCTTATCATCTCACACATCCTGGAAAGTGACTTTAATGGAGTCTTCAAATGTGAGCAGGACAACTTCAGAAACTCAGCTGAGGCGCGGTACTCACTGACCCGTGtgcaaaTGCCTATGAATCTTCTTCTCCTGGAAGGTGAGGAGCTCTCTTTGGATTGTAAGATGGAGACGCCTGTAAAATGGACAGCACCCAACGGCACCTCGTATATCAATAGACTGTCTGGAAACAAGAACATCCTGAAAGTGCCGAACACCTTAATCCAAGACAGCGGAGTCTGGGCGTGTGAAGCGAGTGCAGGCCTTAGAAAATTCAGAGCCGCGACTGCTGTGACCATCCTCGGTCTCTCCCCCCCTCCATCAGACACCGTCTACACCTCCCTCTCTTCTTCCATCACTCTCCCCTGTTCCCTCTCCACTGATGTTCCTTGGTCTCAGTTACGAGAGAAAGGTCTGCAGGGCGGCAGCTGGAGCTTCTCCCCGCCGAACCAGTCCCACCAGCAGGGTCACCAGCTCCTCACACTGGGGCCCAACCAAACCCAAGCCTGGAGAGCACAGAGCACCACCAGCTGCCTCACTGAGCGTGAGTTCAAGAACCGCGACCTGTCTGCTCAGACCCAGAAAGTGTCCACAGACTGCAGGGGGACGTACCAGTGCAGCCTGGAGTTCAGGAACAAGAGACCAATGAGAAGAACGGTGAAGCTGGAGGTGCTGGAAGCCCTCTCCTCTGCTCCTGCGGGGGCACCGTTACTGGAGGGTGATAAAGTGAGCCTGAACTGCAGTCTAGGGGTCCCGCTGCCCTCTGACCTGGGGGTGAAATGGACGCCCCCGAAGTCTTCAGCTTTTTCTCTGCCTAAAGCTCATGGGGTCCACCTGTTCCTCCCTGCGGTCAGTGTAAAGGACAGCGGGGTGTGGAGGTGTGAACTGATGAAAAATTCAGTTGTTCTGACGTCGGCTTCAGTCGCTCTGAAAATAGAGAAACTAGTGAAGACCTGGGTGATCGTGACCATTTGCAGTGCTTCCATCTTCATCCTCCTTCTTATCATCACTCTTATCATCATTCATAGGCGCAGACAGgtTGTTATTACCAGGCGAAAGACCAGATTCTGCTGCTGCAAGAAtCCTCAGCCCAAAGGTTTCTACAAATCCTGAGGACAGATCCTTGATCCCATCATGACCAGCAGGGCTCCAGTCAGACTGGAGTCTGAAGGATGCTGGTCTCCTGTCTGAGCAGAAGCTGTGCTGAGCTGAGCTTATTGGACTGATAATAAGTGTTTCTCCTGCTGTTGTGTAAATATGAACTCCCAATTCTGCTGGAAAACATGGTTCTATAGTATGTTAAATATTTGAAAGATAATGAAGGGGATAATGTTGATTCAACCTTTATATGACATGGATTCAACTGTGGATAAACATTGAAATGTTAGCtgggctgaatgcaatcaaatccttcaCAGCAACTAAGCGACGTCAAGTTTAAAGCCTTTCCGGAAGAGTAGAGGCTTctgtttgtaaatatattttgatttgaGAAGCTATGCCTTGTCTGCTTGTCTGTTAACTGTTTAAATgtatcattaaataaatatgtacaacagaatatataataaattaaataatcttagtgcatcttaaaaaataag

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250880.2 True 2167 mRNA 0.49 11 9864750 9910377
XM_007250881.3 False 2166 mRNA 0.46 10 9890878 9910377

Neighbor

gene id symbol gene type direction distance location
LOC103042078 NA coding upstream 4441 9832976 ~ 9860309 (+)
lag3 NA coding upstream 33373 9806778 ~ 9831377 (+)
usp5 usp5 coding upstream 64013 9777089 ~ 9800737 (+)
cdca3 NA coding upstream 144760 9713770 ~ 9719990 (+)
pex5 pex5,LOC107598380,LOC107673032,LOC107744280,LOC107724652,LOC107549490,LOC107700196 coding upstream 152288 9690963 ~ 9712462 (+)
cxcr3 NA coding downstream 37882 9948259 ~ 9958984 (+)
LOC103040655 LOC103040655,LOC108266557,LOC108432293 coding downstream 110261 10020638 ~ 10025268 (+)
LOC103040337 NA coding downstream 117017 10027394 ~ 10034268 (+)
pafah1b3 pafah1b3,LOC108432331,LOC107671211,LOC107755833,LOC108266541 coding downstream 131536 10041913 ~ 10047971 (+)
cic cic coding downstream 468852 10379229 ~ 10451391 (+)
G98798 NA non-coding upstream 93552 9770433 ~ 9771198 (+)
G98795 p3h3,LOC107700158,LOC107724912 non-coding upstream 100125 9754221 ~ 9764625 (+)
G98772 NA non-coding upstream 113040 9751178 ~ 9751710 (+)
LOC111193448 NA non-coding upstream 128271 9725074 ~ 9736479 (+)
G98689 NA non-coding upstream 338309 9526155 ~ 9526441 (+)
G98831 NA non-coding downstream 37017 9947394 ~ 10003864 (+)
G98829 LOC103025791 non-coding downstream 58214 9968591 ~ 10027351 (+)
G98841 NA non-coding downstream 139101 10049478 ~ 10053331 (+)
G98935 NA non-coding downstream 264351 10174728 ~ 10175861 (+)
G98938 NA non-coding downstream 273021 10183398 ~ 10197911 (+)
G98636 NA other upstream 551947 9312406 ~ 9312803 (+)
G97931 NA other upstream 2733941 7127804 ~ 7130809 (+)
G97926 NA other upstream 2794621 7068688 ~ 7070129 (+)
apoc1 NA other upstream 2798721 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 3183059 6654350 ~ 6681691 (+)
G98840 NA other downstream 85827 9996204 ~ 10002046 (+)
G98845 NA other downstream 150056 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 262176 10172553 ~ 10178459 (+)
G98967 NA other downstream 583414 10493791 ~ 10498518 (+)
LOC103033199 NA other downstream 1089548 10999925 ~ 11027424 (+)

Expression


Co-expression Network