LOC107197655 (LOC108429979)


Basic Information

Item Value
gene id LOC107197655
gene name LOC108429979
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8314662 ~ 8320505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674262.1
gctgcagctgctggtgctgctacTCGCTGCAGTGGGCAGCAGCTCTCCGACCCACTTGCGCCCCCATTACATTCATTTGCATGACTCGCTGGTGTTGGTTTCCCTCCATAAAAGTGCAGCTTGCTGTAGAAGATACTCCTTCAAAATGGACTCTGATATACTGAAGATCGAGGAAATCGTGATGGGTGGTGGAGAAGATGCTGCCACTTCTGAACTGGACCCTGAAAAAGTAGAGCAGCCttacaccaccatcatcattcaGCAACCTACAACAGCCCCGATCATCCAGTCATACCAGCATGAGAGCTTGCAGTGTTTCCAGTGTTTCATCACTTTCTGTAACTCCAAAGCCAAAGAACGGCATATGAAGAAGAGTCATCGTGAAGAGTACAAACAACAACTGCAGCAGTGCGACACACTTTTTACCTGCTATGTGTGTGACCGCACTTTCCCGTCTTCTGAGGAACTAACGCAGCATCAGTCCACCCACAATAAGGAAGACAAGCCCTTCAAATGTGTGCACTGCCAAGAAAGCTTCCGTACCTTCTCTGAGCTGACCACACACCGACGGCAGGTATGTCCCGAGCGGCAGTTTTCGTGCAAAGAATGCAACGAGACGTTTCGAAGTCCGGTACTTCTACGTAACCACCGCCTGGCCCAACACCCTGTGCGCCTTGAAACGGAGGATGCTGATGACCCTTCAAAGACCCACCGATGTGGCAAGTGCGGCAGAGGCTTCGAGGAAGAGGCGGAACTCCTGCAGCACCAGGAGAACCACGCTGGCAACCAGCACTGCAACGGTGCCTCATCCAAGAAACGCGGGAGGCCTGCCAAAGCCGACGCTTCAGCAGCTGGAGAGAAGAAGCAAAAGCGGATCAAGAAGGAAGAAAGTGAGGCAGGAGAGGAGCCGGGGGTGAGCAACCATTCGGAGGACCCCTCGACTCCACAAGCCGAAGCTGTAACCATACTTGAACCGGAGGCAAAGGTTCCATTTGTGGTCAGGCGGGGCAGACCACCAAAATCCACGCAAGACTCCAAGGCCAAGGAGGATGAAGCGGAGAACAAGAAAACGAAGGCTCCACCGCCGCCTGTTCGAGAGATCCCCTGCACAGAATGCGACCTCACATTTCCGGCGTTGGCGCCGCTGAGGGCGCATAAGAAAGAGAAGCACACGCAGAAAAAGCCTCATCCCTGCAAAGAGTGCGAGGAGAGCTTCAACCGTGCCCAGCAGCTGGAGGCGCACATGTCCCGAGCTCACACGGCCGGGCGCTACAACTGCTCCACGTGCGGCAAGAGCTTCAGCAGAGAAAGCAACCTGAAGGCTCACCAACAGTCCCACGGCAAAGAGGAAGAGAAGCCAGCCGGCCGCGGAAAAAGATAATTCAGCGTGGAAGTGCTGTGTATAAAGGGGTTTGGGTATACGTTTTTAAAGTTTGCTTAATGGAACAACTGAAAGAGCGGGATTAGGTTTGGGTTTGCAAGATTGAAAACAAGTAAAACAAGTGCGTGAGACATTTTTCAAACACTATTAGGGTTTTATGTGACAACTGGAAAGCCCAAAAAAGCCCCACGTGGCTTCTCATCTTCATTTCATCTTAGATCTGTGGCATGGTATATGTTTCAGGCctaatggaaatatatatagGATAATCAAACCTGTGGATCACACACATGAGCATCTTGGGGGAGTTTGAGGGCGGGGGGCACTTAACAGTAAAATTGCTTTGTATCggcatttatttgaatattttattgtttcttttttttttttttttatgaatatctTAAATGAGTTATTGtttttacattctttttagaagtgtgtgtgtgtgtggtgtcagGTGGGAACATACCTGAATAGAATTAATGTTTTCTGATGATGAGCATCAACCTGACTgattagaaaatgttttaattttctgtAGTATCATAAGACGTGAACTTCGTCAAAGTGTCTTTGTTGGCCACCCAGAGAAATTTTGCCCAATAATTTGAATTGTTCTTGACTTGATATTATACTGTACAGTTCTTAATCAAGATTGGTGTGGCTATGATGACGCTAAACCAAAATTAATCTTTTTCTATCTGTTTGGCAAAGACTCGAGATGATTCTTAACAAATTTGTATGACCTGACTTTAAATCATTAAGCTGTACTATAAGAAGTCTTTCAATAAGTCTTTTACCTTGTTTGTATAGATATTACTATGATACTTTGATAAGAGTTGTTGAATGTACTGTGAATGGCATTCTCACATGAGGGtgttacacatttaaaaactgttattGATTTTGGATATCAGCTCCTAGattgtatgtagtgtatgtagAGCTGTCCGCTGTCTTTTTGCAGAGATTGGGAAACCTTTCAATTTATCATAGTAATATAAATTAACTTTATAAAACCCTACAAACAAAGTACTTGGTAAAACTTTGTGCTTTGTATTCTTTTGCCTTGATGCATCAGAAGGTGCTGTGCTGTTGATCTGGCTTTGTTAAGCCagatgtgtttagttttttttttttccatttttcatcAAGAAACTTACATTTGCTAGATGCAGTTTTACTCAATTAACAACTCTTTGTGACCtctgtaattacatttaatacagttttgAGCCCATTGTGTTTTGATTTTCTTTACATTAGTAATTCACAGACTTTGATAACCATGGCCCttgtggggggaaaaaaagaagtgtCCTACTGTGTCTTTGTCTCTCATATGTAATTTGTTCCATGTTGGCTAAACTGTATCAAATTAAAGGAACCCACATTAAGGGGCTGCTACAGAA

Function

NR:

description
PREDICTED: zinc finger protein 502-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674262.1 True 2796 mRNA 0.44 5 8314662 8320505

Neighbor

gene id symbol gene type direction distance location
LOC103047702 NA coding upstream 2675 8295398 ~ 8311987 (+)
LOC103044944 NA coding upstream 20215 8290730 ~ 8294447 (+)
LOC103025184 LOC108265385 coding upstream 26676 8283146 ~ 8287986 (+)
LOC103024656 si:ch211-261d7.3,LOC108429975,LOC107714745,LOC107699514 coding upstream 38051 8271514 ~ 8276611 (+)
LOC103024130 NA coding upstream 84692 8223512 ~ 8229970 (+)
LOC103025484 NA coding downstream 888 8321393 ~ 8335355 (+)
tyrobp tyrobp coding downstream 38048 8358553 ~ 8364613 (+)
LOC103026621 klhl38,LOC108429983 coding downstream 108015 8428520 ~ 8433293 (+)
fbxo32 fbxo32,LOC107714740,LOC107723524,LOC107657681 coding downstream 123429 8443934 ~ 8458320 (+)
LOC103027501 NA coding downstream 156348 8476853 ~ 8481861 (+)
G98232 NA non-coding upstream 35460 8278004 ~ 8279202 (+)
G98234 NA non-coding upstream 36839 8277070 ~ 8277823 (+)
G98240 NA non-coding upstream 57592 8247855 ~ 8257070 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding upstream 69797 8237590 ~ 8244865 (+)
G98185 NA non-coding upstream 218052 8020574 ~ 8096610 (+)
G98248 NA non-coding downstream 15921 8336426 ~ 8338117 (+)
G98250 NA non-coding downstream 19539 8340044 ~ 8347080 (+)
G98249 NA non-coding downstream 27833 8348338 ~ 8349508 (+)
G98255 NA non-coding downstream 54129 8374634 ~ 8374942 (+)
G98256 NA non-coding downstream 60375 8380880 ~ 8381089 (+)
G97931 NA other upstream 1183853 7127804 ~ 7130809 (+)
G97926 NA other upstream 1244533 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1248633 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1632971 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1749659 6532516 ~ 6565003 (+)
G98636 NA other downstream 991901 9312406 ~ 9312803 (+)
G98840 NA other downstream 1675699 9996204 ~ 10002046 (+)
G98845 NA other downstream 1739928 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1852048 10172553 ~ 10178459 (+)
G98967 NA other downstream 2173286 10493791 ~ 10498518 (+)

Expression


Co-expression Network