LOC103033117 (LOC108439884,LOC100333521,LOC107696163,LOC107750940)


Basic Information

Item Value
gene id LOC103033117
gene name LOC108439884,LOC100333521,LOC107696163,LOC107750940
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13103115 ~ 13109604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU205216
ACAGCATGGCGCCTCCCAGCACTGTTTTGTTTGGTCTATcatctgttttatatattatagcaGGGGCTCAGGAGTTGAGCGATTCCTGGGATTCCTGTTATAAGAGAGTGAAAAGCAGCAGACCCTCGTTTATAAGgacCTACCCCAGGCCTCATGAGTTCCTGAATGTCTCGGACCTTCCTGCAGCCTGGGACTGGCGCAGTGTTGATGGGAGGAACTATGTGAGTGTTACACGCAACCAGCACATCCCGCAGTACTGCGGCTCATGCTGGGCCATGGGGGCCACCAGTGCACTCGCAGATCGTATAAACATCAAAAGGCAAGGGGCGTGGCCATCAGCCTACTTGTCGGTTCAGAACGTGATTGACTGTGGAGGGGCGGGATCATGTTTTGGAGGCGATCATCTGGGTGTGTACGCTTATGCACACGAGAAGGGCATTCCAGATGAGACCTGCAACAACTATCAGGCCAGAAATCAGAAATGTGATCCATTCAACCAGTGTGGTACCTGCTCATTCTTTGGCTCCTGTTCCATTGTGAATAACTACACGATGTGGAAGGTGGGAGATTATGGGGAGGTCTCAGGACGAGACAAAATGAAAGCTGAGATCTACAAAAATGGGCCAATCAGGCAAGACTTTACCTTAGACCTACA
>XM_007235559.3
CTCCTCCAACAACTCTACATCAAAACAAATACAGCATGGCGCCTCCCAGCACTGTTTTGTTTGGTCTATcatctgttttatatattatagcaGGGGCTCAGGAGTTGAGCGATTCCTGGGATTCCTGTTATAAGAGAGTGAAAAGCAGCAGACCCTCGTTTATAAGgacCTACCCCAGGCCTCATGAGTTCCTGAATGTCTCGGACCTTCCTGCAGCCTGGGACTGGCGCAGTGTTGATGGGAGGAACTATGTGAGTGTTACACGCAACCAGCACATCCCGCAGTACTGCGGCTCATGCTGGGCCATGGGGGCCACCAGTGCACTCGCAGATCGTATAAACATCAAAAGGCAAGGGGCGTGGCCATCAGCCTACTTGTCGGTTCAGAACGTGATTGACTGTGGAGGGGCGGGATCATGTTTTGGAGGCGATCATCTGGGTGTGTACGCTTATGCACACGAGAAGGGCATTCCAGATGAGACCTGCAACAACTATCAGGCCAGAAATCAGAAATGTGATCCATTCAACCAGTGTGGTACCTGCTCATTCTTTGGCTCCTGTTCCATTGTGAATAACTACACGATGTGGAAGGTGGGAGATTATGGGGAGGTCTCAGGACGAGACAAAATGAAAGCTGAGATCTACAAAAATGGGCCAATCAGCTGTGGCATCATGGCGACTAAGGGACTGGAGGCGTACCAGGGAGGAGTGTTTGACGAGTTCCATGTCATCTCTCTCCCGAACCACATCGTATCTGTAGCTGGTTGGGGTGTGGACGAGGACAGCACAGAGTTCTGGATAGTACGGAACTCCTGGGGAGAGTTTTGGGGGGAGGCAGGCTGGGCCCGGATAGTCACCAGTGCGTATAAAGGAGGTAAAGGCAACTGGTACAACCTCGCCATCGAGAAAAGCTGTGCATATGGAGACCCCATAGTGGCCTAGAGGAAGAGCAACTGCTGAGAGCCAGATCTGCCCACATGGCCATACCACACTCCAACTACCTAATGAGCACCTACCAAGCACCTACCGAGCATTTTTTAATagacattttcttttttgagaGATAAAAACATTGATTTGTGTGGTATACTAAGCATCAACCACTTTACAgctattcagaaaaaaatgagtCAGAAAATCAAGAGTTAGAGTGCCATAAAAACATTTGATAATGTGTCATATAAATACAGTGTGATCAGGATTTAATAAGAATGATTGCTGTAATGCAAAAGTACATGCTGATTTATGCAGAATactgtaatttgttttatatatgctGTGTCATAATTACAGTGACGAGTGATGGAAAGTGATGAAACTCTAGAGGTATTGCACTAATGATTCTAAAGTGCCATTTTTATGTGAAATGCTGTGAGATTGTAGCaaatatgtgtaatatttttttgacCCAATGATTAACATTTCATGTGTGCACAAATTTAAACATGTCAAACTAGTCAAATAAATATAAGatcttaagtcttttttttaagttatgagGGCCACAAAGCACAGTATTGGTGTGAAAAGCACAGTGATAGGTTCAGACAAAATGTAATGAACATGAGTCTGATCTAGAGtttcaaacattttataatgtctATGGTTTTGTTCTGTTTGAAAGATAAAATATGATTGTCTAAACtttactgtgatattttaccaAAACAGGGTAAACAGCTTAAGCTCTCAGtcccttgaaaataaaacaaaaggtaATGTC

Function

NR:

description
PREDICTED: cathepsin Z-like

GO: NA

KEGG:

id description
K08568 CTSZ; cathepsin X

RNA

RNA id representative length rna type GC content exon number start site end site
TU205216 False 655 TUCP 0.50 4 13103145 13107515
XM_007235559.3 True 1722 mRNA 0.43 6 13103115 13109604

Neighbor

gene id symbol gene type direction distance location
napg napg,LOC107750913,LOC107696142,LOC107687900,LOC107596233 coding upstream 78546 13013783 ~ 13024569 (+)
LOC107197877 LOC108442433,LOC108280639,LOC106596660,LOC106569828,LOC107750908 coding upstream 227387 12848418 ~ 12875728 (+)
LOC103039850 celf5,LOC108444550,LOC108280171,LOC107750904,LOC107667861,LOC107696073,LOC107729965 coding upstream 580821 12295483 ~ 12522294 (+)
LOC103040483 LOC108427120 coding upstream 915882 12183829 ~ 12187233 (+)
creb3l3 NA coding upstream 927707 12129169 ~ 12175408 (+)
LOC103038185 NA coding downstream 39505 13149109 ~ 13171989 (+)
LOC103033765 LOC108439882,LOC108280735,LOC107552688,LOC107750941,LOC107696794,LOC107754590 coding downstream 67054 13176658 ~ 13181747 (+)
LOC111194542 LOC108439873 coding downstream 148531 13258135 ~ 13265901 (+)
LOC103039137 LOC108439880,LOC108280256,LOC107552681 coding downstream 158184 13267788 ~ 13270876 (+)
trnar-ccg_2 NA coding downstream 165907 13275511 ~ 13275583 (+)
G151410 NA non-coding upstream 109517 12993364 ~ 12993598 (+)
G151377 NA non-coding upstream 290241 12777716 ~ 12812874 (+)
G151347 NA non-coding upstream 368848 12732022 ~ 12734267 (+)
G151302 NA non-coding upstream 496028 12544064 ~ 12607087 (+)
G151272 NA non-coding upstream 809594 12293082 ~ 12293521 (+)
G151504 NA non-coding downstream 104756 13214360 ~ 13214585 (+)
G151517 NA non-coding downstream 182727 13292331 ~ 13292685 (+)
G151518 NA non-coding downstream 185036 13294640 ~ 13296287 (+)
G151559 NA non-coding downstream 265572 13375176 ~ 13375562 (+)
G151561 LOC103036308 non-coding downstream 266763 13376367 ~ 13377974 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 1499074 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 1541571 11552539 ~ 11561544 (+)
LOC111194536 NA other upstream 1563278 11531569 ~ 11539837 (+)
LOC103037335 LOC108280688,LOC108427207 other upstream 1571704 11278365 ~ 11531411 (+)
G150935 NA other upstream 2361977 10740733 ~ 10741138 (+)
LOC107197015 NA other downstream 120498 13230102 ~ 13236737 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 187990 13297594 ~ 13335076 (+)
G151621 NA other downstream 491005 13600609 ~ 13633602 (+)
G151634 NA other downstream 537076 13646680 ~ 13684847 (+)
pcp4 NA other downstream 648838 13758442 ~ 13762513 (+)

Expression


Co-expression Network