G151517


Basic Information

Item Value
gene id G151517
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13292331 ~ 13292685 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU205311
aatagtgttatgaggttttactaaaaggacagcaaaaattagtcctaaggggcctacacaattgcTAATCTTTAATtgatacttctttcttttgaccactccacccctgatcagttcagtttgggtctttcccacactgaccctcctctgcgctccgctgattggctgtttcttctgaaaggcgggactttctccttgaaccggcaccacgattggtttaGAGGCACACCGCGGTCAGTGCCCCGTAtccttaataataaagttttttaaatttcaatataatacgggaaatttacgggaaagtactaatacgggaggacggcgggaacgtggagtaaaatacggtagtttcccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205311 True 355 lncRNA 0.44 1 13292331 13292685

Neighbor

gene id symbol gene type direction distance location
trnar-ccg_6 NA coding upstream 10630 13281629 ~ 13281701 (+)
trnar-ccg_5 NA coding upstream 11105 13281154 ~ 13281226 (+)
trnar-ccg_4 NA coding upstream 11563 13280696 ~ 13280768 (+)
trnar-ccg_3 NA coding upstream 12407 13279852 ~ 13279924 (+)
trnar-ccg_2 NA coding upstream 16748 13275511 ~ 13275583 (+)
itm2c itm2c,LOC107569273,LOC107698489,LOC107679406,LOC105018535,LOC107573001 coding downstream 56543 13349228 ~ 13358876 (+)
LOC103036611 gigyf2 coding downstream 106614 13399299 ~ 13429787 (+)
c17h2orf82 cunh2orf82 coding downstream 137843 13430528 ~ 13441256 (+)
trnap-agg_5 NA coding downstream 150156 13442841 ~ 13442912 (+)
trnai-aau_11 NA coding downstream 152111 13444796 ~ 13444869 (+)
G151504 NA non-coding upstream 77746 13214360 ~ 13214585 (+)
G151410 NA non-coding upstream 298733 12993364 ~ 12993598 (+)
G151377 NA non-coding upstream 479457 12777716 ~ 12812874 (+)
G151347 NA non-coding upstream 558064 12732022 ~ 12734267 (+)
G151302 NA non-coding upstream 685244 12544064 ~ 12607087 (+)
G151518 NA non-coding downstream 1955 13294640 ~ 13296287 (+)
G151559 NA non-coding downstream 82491 13375176 ~ 13375562 (+)
G151561 LOC103036308 non-coding downstream 83682 13376367 ~ 13377974 (+)
G151565 NA non-coding downstream 90553 13383238 ~ 13383487 (+)
G151570 NA non-coding downstream 153366 13446051 ~ 13452871 (+)
LOC107197015 NA other upstream 55594 13230102 ~ 13236737 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other upstream 160878 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other upstream 182727 13103115 ~ 13109604 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 1688290 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 1730787 11552539 ~ 11561544 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 4909 13297594 ~ 13335076 (+)
G151621 NA other downstream 307924 13600609 ~ 13633602 (+)
G151634 NA other downstream 353995 13646680 ~ 13684847 (+)
pcp4 NA other downstream 465757 13758442 ~ 13762513 (+)
LOC103044755 LOC108443098 other downstream 627740 13920425 ~ 13943509 (+)

Expression


Co-expression Network