LOC103044755 (LOC108443098)


Basic Information

Item Value
gene id LOC103044755
gene name LOC108443098
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13920425 ~ 13943509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU205588
aaaaaactgttacagtataaaaaacGCACTGTGAGTAAAAGAAtctttacaaataataattaaaaagttgATGCTGTGCTTTTGATAATTCACAAAATTTggcaataaaatatcaaaaattatATCAATAGCAAAATATCAATTTTTACACAGTGTCTTCGCAAcctatgtgttttttatttctccttaATTATTTCACCATTAGTCACCAAAGCCAAGCAAACATCATCTCATTGAGAATTATgctgaggcctttaatccctccaccaaatgtcaaataaaaccaAATTCTCTCAAActcaacaaaacaaataaatatatctgCCTACATGGATTTGTTTTTATCTTAAGCAAAGGTGTCCTGTCTAAATGCACTACAACAAAAGcagctgaaataataataataccctGCAAATGAAGGATATATTGTCTGTGTTTTGAATGAAGGTAAGGAATCTTCCTGTATTTTAATGAAGGATCAGACCTGAGATCATGAATCTGGTTAGTTTtaatatttcttcttcttctccccttcctccctccctctctcccgaTATAATGACCGTTTGTATTTGTTAAATATCTCAAAGACTgattatacaatatacacattTCAAATTTacatattatgtatattctttatctgtttatctgttagCGGTGATGGTTTACCTCCAGACTCTCagtcatgttttatttaatgcttgattgtttttttttggttacttttttcatcttttaaaCATGTTGAATGATTTTGTACCATACACAGATACCTGACTGTCTATTTGATTGTATTAAGAGTTATTAACGACACATCAACGATCAAACTTGCACTTCAcagtatatacaaataaattgtgtgaaaagag
>XM_022679007.1
GCTGGTTGTGGGGGAGATCAGGAAGTTCTTGACAGCTCAGAACTTTAGGAGCTCCAGTTCGTGAGGCGGCTGTTCGGTCTGGTTGCGcgtttctgaatattttctgaaGTTTCTCAGTCGATTCGCTGAAGATGGGCGGCGAGTCAACCCCAGCAGCAGTTCGCTCCTCGGCCCAGGACTGATACTccccggaggaggaggaggaggacctGATCCCAGTAGGAGCTGCTGGAGAAAGCGGGCGAGATGCTGCTGCTGGTCCGGGGGTCTCTGCTTctgctcctgctcctgctcTGCTGCAGGACGGCGCACTGCGTCTACAAGATCCCCCTGAAAATCTTCTCCCCAGGCTCCTTCAGTTCCTCATCAGCGGGCCTGCAGCTCCAAGCTCCCAAACCCAACCAGACAGCTCCGCGGAGCGCCCTGTCTCTGGCCTCAGACCAATCTGGAGCTGTGAACTTCTTAGACATGGTGAACAACCTGAAAGGAGACTCTGGTCGGGGGTATTACATGGAGATGGTGATCGGGACTCCGGGACAAACGTTGAATATCCTGGTGGATACTGGAAGCAGCAACTTTGCAGTGGCAGCAGCACCGCATCCCTACATCGCAACTTACTTCAACAGAGCACAATCCAGCACCTACCAGACCAGTGGCAGGTCTGTGTCAGTCAGGTACACCCAAGGGAACTGGGAGGGGGAACTGGGCACTGATCTGATCACCATCCCTCACGGTCCAAACGGCACAATCACCATCAACATTGCTGCTATATTAACCTCAGACGACTTCTTCCTCCCCGGCATCAACTGGCAGGGAATCCTGGGGCTGGCGTACCCTTTATTAGCGCGGCCGGATCCATCAGTGGAGCCTTTCTTCAATTCTCTCGTGCTGCAGACTGGCATCCCAGATGTCTTCTCTCTCCAGATGTGCGGAGCAGGACTCTCTATCAGTACTGCGTCTGAGCCGGCAGGGGGCAGTTTGATCATGGGGGGTGCTGAACCAACACTGTACCAGGGCTCAGTGTGGTACACTCCAATCCTGCAGGAGTGGTACTACCAAGTGGAGGTCCTGAAACTGGAAGTTGCCGACCAGAATTTAAGCCTGGACTGCAAGGAGtacaATACAGATAAAGCAATTGTGGACAGCGGGACGACTTTACTGCGGCTGCCGGTGAAGGTGTTCAATGCTGTGGTGGAGGCCATCTCACAAATGTCACTGGTCCAGGATTTCTCCTCAGGTTTCTTCGCTGGGACAAAGCTAGCTTGCTGGGTAAAAGGAGAGTCACCATGGAGGTTCTTCCCCAAAATCTCGATCTACCTCAGAGGCACCAACAGCAGCCAGTCTTTCCGCCTTACCGTATTTCCACAGCTTTACATTCAGCCAGTCACAGATTTGGATGGCACGCTGAATTGCTTCAGATTTGGCATCTCTTCCTCCACAAATGGTCTTGTGATTGGTGCCACAGTCATGGAGGGTTTCTATGTCGTTTTTGACCGTGCTCAGAAGAGGGTGGGCTTTGCTGTGAGCTCCTGCGCTGAAATGAATGGGGTTCCAGTGGCAGAGATAGCAGGACCGTTCCCAGCTGATGGAGCGTGTATCGGCACTTTCCCTCTGCAGGAGCCTCTGTTGTGGATCATAGCCTACTCTCTGATGGGGGTGTGTGCGCTGGTGCTGCTCATACTCCTCATCCTGCTGGTGGTCCCCTGTCGCTGCCGGTACCCGGATGCAGAGATCACGGACCAATCCTCGCTTGTACGCCATCGCATCAAATGATGTCGGGCCACTGACTCGGCCCAAGTAGTGCTGAACAGGTCTCTGGCTCAGGAGACTCTTGGACCACAATTTTCTGCTTGAAGTTGGATGACTTTCTTTGTTAATAGTCTTAGACATTTCCGACTGTTCGTTTTGGACACATATTGAAACCGGACGTGAAGAATACTACTGAGTTCGTCTTTGTAAGCAAATGAAACCCCAATGGACCACAAGGTTAAAAGgaattttccagtgtttttacaCCTAATCTTTGTCACATGTTCCCAAAACCTGGACACTGGGATCTTTTTAACATGATTCAaatcagtgctgtttttttcccttaaaaaaACACGTTAATTGACTATGGGTGGCACAATGGTGTTGCAggtagtgtgtatgtgttgcaCAGTTCCAGATCAGTACAATCCTTTATCTCAATCTGTGACTGAAATGGATCCCCTATTACTCCCTTATTAGTGTTGCACTATATAGGCAAAGACTGTTTGGTGGATGTTTTAATTGAATGCCGTTATTAACTGGACAGTACTggacagtagaaaaaaaaagaaatcagaaatacagtaccagtcaaacatttggacataccttctcattcattatctatttactttctatattgtatattaatattaaagacaattAAGGGATACATATGGAGTTATGTAGTCAACAAGAGATCAACAGAGATTTAGAGATTTCAGGCGATTTTGGATGATTGTGGattttgttcagcacctccaggaactccttcattAAGACTGAGAAAATTATTCCAGGTggctctccctcatgaagacactgagattaaaataccaagagtgtgcagatctgtccttaacgataaatgtgctacttaagtataaaacatattctgttaaaataataaaataatcccATGTTTCTATATAGCTTAAatgtttacattatatattaaatatttaaatatatattaaatttacaatgtaaagaaaaacataaaaaaaaaaagaaaacacatttaatgagaagaggtgtgtccaaacttttggctggtactgtattataatGAAAATCTCATAACTACTGAAAATGAGCTTCATTTACGTCAGATGTCAGAGCTGGGCGTGACGTCACAGTAGAGTTGAATGTATTTCAGTTCAGTGTTGTAATTTTACGctattacaaaatattttgtgtgtacAACTTTCTATTTAATTCTAcacaaacagataaaaataataaactgtataatactactgAATTTACATCTTGGATTTTGGCTTGGGGCTGGTGAAGCTCACCCTACTTTTCAAATAGGAAATCTGAGGGGTGAAAGCGTTCCAGTTGAAAGTTTCTACAGAAATTCCGACATTCAAGGTCAAATGGAGCACAGCATTGTCTCACAGTAGTAAGGCCTACTAAATTTTAAGTCTTAAGATACAAAAAGATGTTGAAAAGGTTAAGGCCTCTGCAGACTCCCTTTGCTGAATGTTTATGAATGTTCTTAAGTGTTGCATTAAGCCAAATGTGCATTCACAAGCTTATGTATTACATATTCATGTTGGCAAGAACTTgcagtatacaatatatcgcaataCTATAAGCAAGGTGAtatttgactatttttttaaattaaaataataataaaaaaactgttacagtataaaaaacGCACTGTGAGTAAAAGAAtctttacaaataataattaaaaagttgATGCTGTGCTTTTGATAATTCACAAAATTTggcaataaaatatcaaaaattatATCAATAGCAAAATATCAATTTTTACACAGTGTCTTCGCAAcctatgtgttttttatttctccttaATTATTTCACCATTAGTCACCAAAGCCAAGCAAACATCATCTCATTGAGAATTATgctgaggcctttaatccctccaccaaatgtcaaataaaaccaAATTCTCTCAAActcaacaaaacaaataaatatatctgCCTACATGGATTTGTTTTTATCTTAAGCAAAGGTGTCCTGTCTAAATGCACTACAACAAAAGcagctgaaataataataataccctGCAAATGAAGGATATATTGTCTGTGTTTTGAATGAAGGTAAGGAATCTTCCTGTATTTTAATGAAGGATCAGACCTGAGATCATGAATCTGGTTAGTTTtaatatttcttcttcttctccccttcctccctccctctctcccgaTATAATGACCGTTTGTATTTGTTAAATATCTCAAAGACTgattatacaatatacacattTCAAATTTacatattatgtatattctttatctgtttatctgttagCGGTGATGGTTTACCTCCAGACTCTCagtcatgttttatttaatgcttgattgtttttttttggttacttttttcatcttttaaaCATGTTGAATGATTTTGTACCATACACAGATACCTGACTGTCTATTTGATTGTATTAAGAGTTATTAACGACACATCAACGATCAAACTTGCACTTCAcagtatatacaaataaattgtgtgaaaagagaacaactgcaataaaatatttgccAAAATA

Function

NR:

description
PREDICTED: beta-secretase 2-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K07747 BACE2; beta-site APP-cleaving enzyme 2 (memapsin 1)

RNA

RNA id representative length rna type GC content exon number start site end site
TU205588 False 872 lncRNA 0.31 1 13942608 13943479
XM_022679007.1 True 4303 mRNA 0.42 10 13920425 13943509

Neighbor

gene id symbol gene type direction distance location
LOC103043540 NA coding upstream 169573 13747658 ~ 13750852 (+)
LOC103037413 foxl2 coding upstream 183808 13734809 ~ 13736617 (+)
LOC103040694 pax3a,LOC108439877,LOC108280216,LOC107738801 coding upstream 376009 13504905 ~ 13544416 (+)
trnag-ccc_1 NA coding upstream 439386 13480969 ~ 13481039 (+)
trnai-aau_11 NA coding upstream 475556 13444796 ~ 13444869 (+)
nop53 NA coding downstream 51310 13994819 ~ 14002138 (+)
LOC103038690 LOC103038690,LOC108443093,LOC107567262,LOC107655289,LOC100331216,LOC105901416,LOC108280251 coding downstream 64670 14008179 ~ 14038002 (+)
dmac2 NA coding downstream 135521 14079030 ~ 14084542 (+)
LOC103045664 LOC107726114 coding downstream 158381 14101890 ~ 14126748 (+)
chchd2 chchd2,LOC107655825,LOC107730989,LOC107574035,LOC107677095,LOC107567580 coding downstream 287034 14230543 ~ 14234482 (+)
G151699 NA non-coding upstream 154398 13765655 ~ 13766027 (+)
G151633 NA non-coding upstream 176363 13741327 ~ 13744062 (+)
G151655 NA non-coding upstream 190311 13729824 ~ 13730114 (+)
G151632 NA non-coding upstream 237312 13678974 ~ 13683113 (+)
LOC111194545 NA non-coding upstream 247299 13668891 ~ 13673126 (+)
G151730 NA non-coding downstream 22036 13965545 ~ 13966254 (+)
G151740 NA non-coding downstream 114716 14058225 ~ 14060372 (+)
G151753 NA non-coding downstream 141758 14085267 ~ 14086143 (+)
G151755 NA non-coding downstream 143450 14086959 ~ 14087323 (+)
G151772 NA non-coding downstream 241547 14185056 ~ 14186349 (+)
pcp4 NA other upstream 157912 13758442 ~ 13762513 (+)
G151634 NA other upstream 235578 13646680 ~ 13684847 (+)
G151621 NA other upstream 286823 13600609 ~ 13633602 (+)
LOC103039742 LOC108439864,LOC108280459 other upstream 585349 13297594 ~ 13335076 (+)
LOC107197015 NA other upstream 683688 13230102 ~ 13236737 (+)
sirt2 sirt2,LOC107726128,LOC107655297 other downstream 145060 14088569 ~ 14095319 (+)
LOC107196904 NA other downstream 444906 14388415 ~ 14509200 (+)
G151965 cld3,LOC103033895,LOC108424093 other downstream 1149211 15092720 ~ 15093893 (+)
G152262 NA other downstream 1793231 15736740 ~ 15737042 (+)
atg5 atg5,LOC107697282,LOC107661007 other downstream 2347460 16290969 ~ 16339410 (+)

Expression


Co-expression Network