CI01000012_06826817_06842273


Basic Information

Item Value
gene id CI01000012_06826817_06842273
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6825923 ~ 6842529 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_06826817_06842273.mRNA
GTTTAAAAACAGGAAAAGACAGCAACGAGAAAGGGAGCAAAGCACTTTCTTCTTAACATGCTCTTTGATTTTTTTAATCCTAAAACTTTTTATTTGATTTAAAATAAATAAAAAAATAATATATATATTTTAGCATATTTATTTCTAGTACACTATATATACTCTCTGCTGTTCTCTGCGGGTACACGAGCACTGAACGGCCGCTGACGGCCTGGAGCTCACATCTGCGAAAACGTCAAAACAAATAGTAAAATAGGCGCTATGTTTATATATGAGTCACTTATTTAAAGTCTAAATAACTTCATTCTCACCTAGAAAAACTCTTTAAACTACATTTTGTGACATAACAGTAGTATTTATAAACTAATATGGCAAATTTGCTCGACCGCCATGACAGTCGCCGCAAACAGAGTGATACAAACGGTGAAACGGTACCGGTGCTGATACTGGGTGAATTTTGCACGGCTCTCAGCCAATCAGATTAGAGAACCAGAAAGAACTGTTGAACAATTACACACACACACACATATACATATATATATATTGTTTATATATAGTTTGTGATTTATTTTTTTTTTACTTTATTAGAAACATTGATTTAAAACATGCGAAATAGACAGATTTTCACAGGTGGTCTCACTTTTTTTTTCTGCTTATATTTATTCATGGACTTCATACATGCTGAATGAAGACTGAACTTGCAAAAGGTTCAATATGCATTACTCTCACTGAGAACCTTTCACTGCAATTTCACATCGCCCACCACCTTCCTCGTCTTAAACAAGAGCCTTTCGGTGATGGGGACAGCGAGAGCTGGAGCGCAAGTGAGAGACTGAGAGAAAAAGGGGAACATTAGCTCAGACAGACACTGCTACTCTGACACGCTGGGAAGTGATGGAGGGAGAGGAAGAAGAACGTGAGCGAAGACTGGAGCTTCTGTGCTTGACATGTGGAGACATCAAAGCCGTGGAGGTGGAGAGAAAGGCAGAGGAGAGCTCATTAACATCGACATGCCAGTCTCTGACACGGCACCATGACACCATAATTACTGCCACGCTCGATAGTCCTTCAGCTCCACCCTCTCACTGCTCCAGACAGACAGAGAGAGACAGAGACCAAGAAAACAGCCAGAGAGACGACAACTGCTTCATTATCATTTTAAATTGGGCTTTTTGTTTCCGGCGACATGAAAACAGCAGCAAGATGGGAGGCAGTTGTCAGAGGAAGGAGTGGAGCAGAGGAGGATCAGATGTCAGCTCATTACAAACTCGCATTGCTCTTTTTGCACCTAACATCCATTTAACCTTTCACCCTCGCACACATGCCTCATACATACTGACACCAGCAGCTCCTTTACCAAAGAAAGGTCAGATTATTGAGCAAATTAACACTGAGTTCAACCAGTTACAGACTAATGCAGTCCAGAGCAAAAGAACACCATTGCTTGATCATGACTTGATCAAATCACCTTCTAACAGACCAACTTTATTCCAAGAACTCAACTGATTGAATGTCCTGTACTTAGTTTTAAAGTTCAGTTCAACCTCCATAACTCTTTCTGTACTTCTGATTAACTTCACGGATCAGAACATTGAGATTAGCAATGAATTCTATTTCAAGTCTCCATCAAACATCAGCGTAGGTGCAGGATCAGAGGTCTCTTTGGGATTATGAGCCCGGCTTTAAACGTGACAAACAAGTACCGGCTAGAACTGTCCAAACGGGCATCGGCAAACCCGCTCTTTTCATCTGCCAAGGCACA
>TU83204
ATTTCATTTTTGGGTGAACTAACCCTTTAAATAGGTATGTTTAATCTAAACAACTTATTTTGAAATATGTCTCAAGACTTAAGGAAAGGATTTCGTAGTTGATTTTTAATACCTTTATGTTTGTACTTTACATACACTTAGCATTGCAAATAACCAGCTTGCTTTTTGTTTTCAAGTCTCCTTCTGGCAGGTCAGATTATTGAGCAAATTAACACTGAGTTCAACCAGTTACAGACTAATGCAGTCCAGAGCAAAAGAACACCATTGCTTGATCACAGACCAACTTTATTCCAAGAACTCAACTGATTGAATGTCCTGTACTTAGTTTTAAAGTTCAGTTCAACCTCCATAACTCTTTCTGTACTTCTGATTAACTTCACGGATCAGAACATTGAGATTAGCAATGAATTCTATTTCAAGTCTCCATCAAACATCAGCGTAGGTGCAGGATCAGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_06826817_06842273.mRNA False 1762 mRNA 0.41 4 6825923 6842529
TU83204 True 457 lncRNA 0.35 2 6841944 6842424

Neighbor

gene id symbol gene type direction distance location
CI01000012_06651665_06682236 NA coding upstream 143223 6651588 ~ 6682700 (+)
CI01000012_06620470_06637571 NA coding upstream 188234 6620060 ~ 6637689 (+)
CI01000012_06441231_06476986 KIF16BB coding upstream 348819 6441192 ~ 6477104 (+)
CI01000012_06380300_06388370 ISM1 coding upstream 436932 6380300 ~ 6388991 (+)
CI01000012_06334114_06368535 SPTLC3 coding upstream 456832 6333349 ~ 6369091 (+)
CI01000012_06862144_06865773 NA coding downstream 19013 6861542 ~ 6866078 (+)
CI01000012_06938165_06970627 NA coding downstream 95061 6937590 ~ 6970901 (+)
CI01000012_06990634_06991686 NA coding downstream 148105 6990634 ~ 6991848 (+)
CI01000012_06993214_06995298 FLRT3 coding downstream 150524 6993053 ~ 6995777 (+)
CI01000012_07008711_07010256 NA coding downstream 164773 7007302 ~ 7011132 (+)
G72760 NA non-coding upstream 264312 6557200 ~ 6561611 (+)
G72713 NA non-coding upstream 427283 6397486 ~ 6398640 (+)
G72731 NA non-coding upstream 428913 6396744 ~ 6397010 (+)
G72730 NA non-coding upstream 429220 6396397 ~ 6396703 (+)
G72757 NA non-coding downstream 232137 7074666 ~ 7087621 (+)
G73150 NA non-coding downstream 388657 7231186 ~ 7231443 (+)
G73223 NA non-coding downstream 417297 7259826 ~ 7260038 (+)
G73224 NA non-coding downstream 418331 7260860 ~ 7261065 (+)
G73253 NA non-coding downstream 496241 7338770 ~ 7338975 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 901618 5922385 ~ 5929186 (+)
G71623 NA other upstream 1009318 5813517 ~ 5816605 (+)
G71548 NA other upstream 1264490 5550493 ~ 5561433 (+)
G71221 NA other upstream 1285467 5538525 ~ 5540456 (+)
G71218 NA other upstream 1287539 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 963574 7805248 ~ 7811902 (+)
G73578 NA other downstream 1524277 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 3379426 10223697 ~ 10236276 (+)
G75533 NA other downstream 4302288 11144817 ~ 11145739 (+)
G76385 NA other downstream 5788226 12630755 ~ 12675666 (+)

Expression


Co-expression Network