LOC103033765 (LOC108439882,LOC108280735,LOC107552688,LOC107750941,LOC107696794,LOC107754590)


Basic Information

Item Value
gene id LOC103033765
gene name LOC108439882,LOC108280735,LOC107552688,LOC107750941,LOC107696794,LOC107754590
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13176658 ~ 13181747 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678984.1
GGGCGGGGCCTCGCCGCTGACCATCTGTGAGGGCGTGGCAGAGTGAACAGCACGAGCTGGAGTGGAGCTGCAGGAGCGGAGGTGAAGATACGTGAAGCCCATCATTTCAAGTAGTGCTTCACTGAAGGAGGTGTGGAGAAGAAGCCATGGCAGATGTTCTGgaggagctgaggcagcagtgtCTGAGCAGAGGAGCAGCTGGGATCAAAGGGCTGGGGAGGACCTTCCGCATCATGGACGATGATGGTAGCAAGTCTCTGAACCTGCAGGAGTTTCAGAAGGGGCTGGAGACGTACGGCGTGAATGTCGGACTTGAAAAGGCCAAGCAGATCTTCACCATAATAGACAAAGACAGAAGTGGCACCATTGATTTTAATGAGTTTTTGGAGAAACTAAGGCCTCCGATGTCCAGTACCAGAGTGCAGGTGATCAAACAGGCCTTCCAGAAGCTGGACAGCACTGGTGACGGGTTGGTAACCATAGAGGACTTGCAGGGAGTCTACAATAGCAAGCATCACCCCAAGTACAAGAGCGGTGAATGGACAGAGGAGCAAGTGTTCCGCTCGTTTCTTGACAGCTTTGATTCGCCGTACGAGAAAGACGGAAAGgtcactctggaggagttTGTGAACTACTACAGCGGAGTCAGTGCCTCCATCGATGACGACGCCTACTTTGTAACCATGATGCAAAACGCATGGAAGTTGTAGAGTCTAGTGTCTACAAAACAATACAGCAAGTTGCATGTGAACACTTTGCAAaagctttaaacaaaaaaattgtgcctttcatttttttctattaaacacTTTCCtttacaaaaa

Function

NR:

description
PREDICTED: calcyphosin-like protein

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678984.1 True 824 mRNA 0.49 5 13176658 13181747

Neighbor

gene id symbol gene type direction distance location
LOC103038185 NA coding upstream 4669 13149109 ~ 13171989 (+)
napg napg,LOC107750913,LOC107696142,LOC107687900,LOC107596233 coding upstream 152089 13013783 ~ 13024569 (+)
LOC107197877 LOC108442433,LOC108280639,LOC106596660,LOC106569828,LOC107750908 coding upstream 300930 12848418 ~ 12875728 (+)
LOC103039850 celf5,LOC108444550,LOC108280171,LOC107750904,LOC107667861,LOC107696073,LOC107729965 coding upstream 654364 12295483 ~ 12522294 (+)
LOC103040483 LOC108427120 coding upstream 989425 12183829 ~ 12187233 (+)
LOC111194542 LOC108439873 coding downstream 76388 13258135 ~ 13265901 (+)
LOC103039137 LOC108439880,LOC108280256,LOC107552681 coding downstream 86041 13267788 ~ 13270876 (+)
trnar-ccg_2 NA coding downstream 93764 13275511 ~ 13275583 (+)
trnar-ccg_3 NA coding downstream 98105 13279852 ~ 13279924 (+)
trnar-ccg_4 NA coding downstream 98949 13280696 ~ 13280768 (+)
G151410 NA non-coding upstream 183060 12993364 ~ 12993598 (+)
G151377 NA non-coding upstream 363784 12777716 ~ 12812874 (+)
G151347 NA non-coding upstream 442391 12732022 ~ 12734267 (+)
G151302 NA non-coding upstream 569571 12544064 ~ 12607087 (+)
G151272 NA non-coding upstream 883137 12293082 ~ 12293521 (+)
G151504 NA non-coding downstream 32613 13214360 ~ 13214585 (+)
G151517 NA non-coding downstream 110584 13292331 ~ 13292685 (+)
G151518 NA non-coding downstream 112893 13294640 ~ 13296287 (+)
G151559 NA non-coding downstream 193429 13375176 ~ 13375562 (+)
G151561 LOC103036308 non-coding downstream 194620 13376367 ~ 13377974 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other upstream 45205 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other upstream 67054 13103115 ~ 13109604 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 1572617 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 1615114 11552539 ~ 11561544 (+)
LOC111194536 NA other upstream 1636821 11531569 ~ 11539837 (+)
LOC107197015 NA other downstream 48355 13230102 ~ 13236737 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 115847 13297594 ~ 13335076 (+)
G151621 NA other downstream 418862 13600609 ~ 13633602 (+)
G151634 NA other downstream 464933 13646680 ~ 13684847 (+)
pcp4 NA other downstream 576695 13758442 ~ 13762513 (+)

Expression


Co-expression Network