LOC111194542 (LOC108439873)


Basic Information

Item Value
gene id LOC111194542
gene name LOC108439873
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13258135 ~ 13265901 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678987.1
AATAAACACCAAGGTGCTGCTCTCCTCAGCAGGAGGGGGCTGAGCGCTACCAGTTTACTTGTGTTTTGCTTTAAGTGAAGGTGCTAAACACTTTCCTCCCGAGATAAAAGATTAATACCTTCCAATGAGAGATACTTAGAGCCTCAAAGCCCCTTAAGCAGTTCATTAGAGAAAGGATGGACCTGAGCCACACGGTTCCCCCGTGGAGATCTCGCGCCCCCAAACAAGGGGGAACTTGCCTTTGGAGGTGAAAAGCTCTACAGGTACTTCAGGAGGAGGCGTTCTCTTTGAACTTTGATGTGTCCCCCGCCTAGCAGCAGGCATTAGAGTGATGGAAATTTGATTACTTCTTCTGGCCTTTCATTTAGCACCAGCGGGGAGCATTTAACCACAGACATTTGTGGCCAGAAGAGAACAGAGTATATATATCCCCACGAGGAAGGACAGGAGGTAGTCAGTAAAGTGTATACTGCTGAGAaccagtagtgtgtgtgtggttagtgtgAGAGAACACAGGAAGCTATAAGGAGTACTGCTATGGATATGGTGCCACTGGGTgtgtttcttcttctctgcatgTGCCATCAGAGTTTGACAAGGAACCTCTTTGCAGAGAGAGCTTGTTGCAGACGCCAGAGTCACTTCGTCTACATAGGAAAAGATATCTCAGGCAGCCCTCTGAATGTGGATGTGGGCATGTGCAGGACACACTGCGGCCAATCAAGGCCATCTTCTTTTGAATCTGGGATGCAAAGCTACTCAAGACATTCCTCCATGCTGGAGTacctgaaagagaaaaagATGAGAATGCTGGCGGCTGCATCTCGAGACTCTGGGCCAGTCAGTGGTGGTGCACCATTATGCGGATTGAGCGCTACCTGTGAGCCCACTGGAACACGAGTGGATAAAGTGCTGCTTATTGATGGTCTGCGAGAGGTTGAGATCATAGAGGACTGTCACTGTGAAGCTAAAGTGACGTGGTGTCTCCGTGCACCGTCCCTAAAGACCTACTTCTTCGAAACACCATATGAGACCACCATCGACGTTGGGAAGTGCGTGGGGTCAAAAGGTGAACAAGAGGGATTTTCCTGTGTGCCGACTAAGTTTGATTCTACTCTTGTGGACACTCCAAACAAAGTGGAGCTGATTCAGACAGTGACTGGGTGTGACATGAAAGAAGGCTGCTACAGAATCCCTTACATAGAATATCATTATGAGATCACATACAGTGAAGAAGGGCTCAAAGAAGAGAAACTGAAGGAAATAGACGTGGGGAGATGTTTGGGAAGCTGCACCTCAGGAAACCGCTGTCTTCTCAGGAGCGCCTCGGATTCAGCTGAGTGTTTGTTGTGGGCTGAGGGTCAGGGCAGCGCATGCGTACCGCAGGGCTACAAGAGCCACACGTTCATGAACCAACACGGCCAAACTCGCACCGTCCTCTCCATCACCTCCTGCCTCTGTCAGTCTTGATCACACCGACCTCTGCTGGACTCACCTGCTCACTGACCTGTAGACAGTCAGTGCAGtatgctgtaaaaaaacaaaaacaaaaaaaaaacacacaaaataacatACATAAAATTGCAGAATCGTaaacttattaaattaaattaagcgtATCTACTtaacctttcttttttttattttgcatttagaGTTCATAGAACGTACAATTTTAACGAATGTAACACTTACTATAAAAAggtaaatgaactaaaaaaaagatactAAGTAATCTTTCTTACAGCTTAATTGACTGTACACTTAAGACTTTTTAATAAGGTTGTTTCGAAATGACTATCTCAGAAGAACCAAATGTTTGTTCCAAAAAGAACTTTCAAAGaattaaagtttaaagtcagtttaaatgtaaacaGTATTGGAGTTTTTgtttcagtacattttttttcaggaaaaaatgtttcttttatattatCACACTTGGCAGTTCATGtattatatgtaaaatatgtaaatatgatgtaaataaaaatacgtTTTTATGTCTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108439873

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678987.1 True 2009 mRNA 0.43 7 13258135 13265901

Neighbor

gene id symbol gene type direction distance location
LOC103033765 LOC108439882,LOC108280735,LOC107552688,LOC107750941,LOC107696794,LOC107754590 coding upstream 76388 13176658 ~ 13181747 (+)
LOC103038185 NA coding upstream 86146 13149109 ~ 13171989 (+)
napg napg,LOC107750913,LOC107696142,LOC107687900,LOC107596233 coding upstream 233566 13013783 ~ 13024569 (+)
LOC107197877 LOC108442433,LOC108280639,LOC106596660,LOC106569828,LOC107750908 coding upstream 382407 12848418 ~ 12875728 (+)
LOC103039850 celf5,LOC108444550,LOC108280171,LOC107750904,LOC107667861,LOC107696073,LOC107729965 coding upstream 735841 12295483 ~ 12522294 (+)
LOC103039137 LOC108439880,LOC108280256,LOC107552681 coding downstream 1887 13267788 ~ 13270876 (+)
trnar-ccg_2 NA coding downstream 9610 13275511 ~ 13275583 (+)
trnar-ccg_3 NA coding downstream 13951 13279852 ~ 13279924 (+)
trnar-ccg_4 NA coding downstream 14795 13280696 ~ 13280768 (+)
trnar-ccg_5 NA coding downstream 15253 13281154 ~ 13281226 (+)
G151504 NA non-coding upstream 43550 13214360 ~ 13214585 (+)
G151410 NA non-coding upstream 264537 12993364 ~ 12993598 (+)
G151377 NA non-coding upstream 445261 12777716 ~ 12812874 (+)
G151347 NA non-coding upstream 523868 12732022 ~ 12734267 (+)
G151302 NA non-coding upstream 651048 12544064 ~ 12607087 (+)
G151517 NA non-coding downstream 26430 13292331 ~ 13292685 (+)
G151518 NA non-coding downstream 28739 13294640 ~ 13296287 (+)
G151559 NA non-coding downstream 109275 13375176 ~ 13375562 (+)
G151561 LOC103036308 non-coding downstream 110466 13376367 ~ 13377974 (+)
G151565 NA non-coding downstream 117337 13383238 ~ 13383487 (+)
LOC107197015 NA other upstream 21398 13230102 ~ 13236737 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other upstream 126682 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other upstream 148531 13103115 ~ 13109604 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 1654094 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 1696591 11552539 ~ 11561544 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 31693 13297594 ~ 13335076 (+)
G151621 NA other downstream 334708 13600609 ~ 13633602 (+)
G151634 NA other downstream 380779 13646680 ~ 13684847 (+)
pcp4 NA other downstream 492541 13758442 ~ 13762513 (+)
LOC103044755 LOC108443098 other downstream 654524 13920425 ~ 13943509 (+)

Expression


Co-expression Network