G159585


Basic Information

Item Value
gene id G159585
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19586448 ~ 19586972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216304
tagcattagcaccgttagcattagcattagcactgggtgctacatacactgctattatgtagacgctgctaagctctctgggcaggtagaatggcctggctctgactacagcaaactccaccagcggcgagcagtagctggagatcagcgcagcgttgttacaccattctgtgttgatgtaaacacacaccccacctccacGTACTTTGCCCGAGAGGCCGGCGTCGCGGTCCGCGCGGTAGCATAGCATGCCGCTCACCTCAATCGCGGAGTCCGGGATGGAGTCCGTTAACCACGTCTCCGTGaaaacgaacacacagcagtctctgaactcgcgctgggatgtccgctggagccggagatagtcaatcttgttcggcagggagcaaacgttggagagaaggagagatggaaccgctggccggctggagttagccattagcttagcgcGGACTCCGGCTCTCTTACCGCGCTTTCGGCTCCTCGCGCAACGCTTGCGGAGAGACCTCTTCCGGCTAGCAGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216304 True 525 lncRNA 0.57 1 19586448 19586972

Neighbor

gene id symbol gene type direction distance location
LOC111194775 NA coding upstream 65895 19515607 ~ 19520553 (+)
fan1 NA coding upstream 74223 19500023 ~ 19512225 (+)
cbfb cbfb,LOC107715607,LOC107715210 coding upstream 89873 19451775 ~ 19496575 (+)
gnao1 gnao1,gnao1a,LOC108264367,LOC107715606,LOC107660763,LOC102196435,LOC100693875,LOC108249535 coding upstream 153323 19317373 ~ 19433125 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding upstream 328414 19253357 ~ 19258034 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding downstream 79652 19666624 ~ 19772127 (+)
LOC103025942 NA coding downstream 188367 19775339 ~ 19847558 (+)
arrdc4 NA coding downstream 1079272 20666244 ~ 20674227 (+)
lysmd4 NA coding downstream 1158596 20745568 ~ 20751796 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding downstream 1399652 20986624 ~ 21007290 (+)
G159583 NA non-coding upstream 611 19585408 ~ 19585837 (+)
G159579 NA non-coding upstream 22482 19563749 ~ 19563966 (+)
G159480 NA non-coding upstream 324122 19259296 ~ 19262326 (+)
G159398 NA non-coding upstream 776378 18786541 ~ 18810070 (+)
G159389 nutf2 non-coding upstream 834294 18738284 ~ 18752154 (+)
LOC103038177 NA non-coding downstream 20444 19607416 ~ 19665139 (+)
G159588 NA non-coding downstream 40874 19627846 ~ 19630672 (+)
LOC111194777 NA non-coding downstream 558730 20145702 ~ 20162076 (+)
G159663 NA non-coding downstream 619092 20206064 ~ 20207105 (+)
G159662 NA non-coding downstream 620255 20207227 ~ 20213526 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 1010011 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 1600544 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 2214242 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 2397197 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 2414220 17101612 ~ 17172228 (+)
G159666 NA other downstream 598544 20185516 ~ 20186919 (+)
G159728 NA other downstream 1149626 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 1422330 21009302 ~ 21011794 (+)
fam174b NA other downstream 1473684 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 2560872 22147844 ~ 22152785 (+)

Expression


Co-expression Network